LICENSE
MANIFEST.in
README.md
mkdocs.yml
pyproject.toml
docs/development.md
docs/fine_tuning.md
docs/index.md
docs/installation.md
docs/napari.md
docs/prediction.md
docs/api/fine_tuning.md
docs/api/prediction.md
docs/research/legacy_training.md
morphodeep/__init__.py
morphodeep/cli.py
morphodeep/config.py
morphodeep/model_core.py
morphodeep/napari.yaml
morphodeep/paths.py
morphodeep/predict.py
morphodeep/research.py
morphodeep.egg-info/PKG-INFO
morphodeep.egg-info/SOURCES.txt
morphodeep.egg-info/dependency_links.txt
morphodeep.egg-info/entry_points.txt
morphodeep.egg-info/requires.txt
morphodeep.egg-info/top_level.txt
morphodeep/DataManagement/data_check.py
morphodeep/DataManagement/extract_Arabidopsis.py
morphodeep/DataManagement/extract_CElegans.py
morphodeep/DataManagement/extract_CellPose.py
morphodeep/DataManagement/extract_Phallusia.py
morphodeep/DataManagement/extract_PlantSeg.py
morphodeep/DataManagement/extract_SeaStar.py
morphodeep/napari/__init__.py
morphodeep/napari/_finetune_widget.py
morphodeep/napari/_widget.py
morphodeep/napari/get_model.py
morphodeep/napari/model.py
morphodeep/networks/__init__.py
morphodeep/networks/losses.py
morphodeep/networks/metrics.py
morphodeep/networks/pretrained.py
morphodeep/networks/unet.py
morphodeep/tools/__init__.py
morphodeep/tools/examples.py
morphodeep/tools/ground_truth.py
morphodeep/tools/image.py
morphodeep/tools/plot.py
morphodeep/tools/setdata.py
morphodeep/tools/utils.py
morphodeep/training/__init__.py
morphodeep/training/finetune.py
tests/test_cli_prediction.py
tests/test_cli_routes.py
tests/test_config.py
tests/test_finetune.py
tests/test_finetune_tensorflow.py
tests/test_inference.py
tests/test_napari_widgets.py