[console_scripts]
GenomeOntology.pl = homer2_ao._launcher:main
SIMA.pl = homer2_ao._launcher:main
addData.pl = homer2_ao._launcher:main
addDataHeader.pl = homer2_ao._launcher:main
addGeneAnnotation.pl = homer2_ao._launcher:main
addInternalData.pl = homer2_ao._launcher:main
addOligos.pl = homer2_ao._launcher:main
adjustPeakFile.pl = homer2_ao._launcher:main
adjustPvalueMatrix.pl = homer2_ao._launcher:main
adjustRedunGroupFile.pl = homer2_ao._launcher:main
analyzeChIP-Seq.pl = homer2_ao._launcher:main
analyzeClusters.pl = homer2_ao._launcher:main
analyzeHiC = homer2_ao._launcher:main
analyzeRNA.pl = homer2_ao._launcher:main
analyzeRepeats.pl = homer2_ao._launcher:main
annotateInteractions.pl = homer2_ao._launcher:main
annotatePeaks.pl = homer2_ao._launcher:main
annotateRelativePosition.pl = homer2_ao._launcher:main
annotateTranscripts.pl = homer2_ao._launcher:main
assignGeneWeights.pl = homer2_ao._launcher:main
assignGenomeAnnotation = homer2_ao._launcher:main
assignTSStoGene.pl = homer2_ao._launcher:main
batchAnnotatePeaksHistogram.pl = homer2_ao._launcher:main
batchFindMotifs.pl = homer2_ao._launcher:main
batchFindMotifsGenome.pl = homer2_ao._launcher:main
batchMakeHiCMatrix.pl = homer2_ao._launcher:main
batchMakeMultiWigHub.pl = homer2_ao._launcher:main
batchMakeTagDirectory.pl = homer2_ao._launcher:main
batchParallel.pl = homer2_ao._launcher:main
bed2DtoUCSCbed.pl = homer2_ao._launcher:main
bed2pos.pl = homer2_ao._launcher:main
bed2tag.pl = homer2_ao._launcher:main
blat2gtf.pl = homer2_ao._launcher:main
bridgeResult2Cytoscape.pl = homer2_ao._launcher:main
calcScore.pl = homer2_ao._launcher:main
changeNewLine.pl = homer2_ao._launcher:main
checkPeakFile.pl = homer2_ao._launcher:main
checkTagBias.pl = homer2_ao._launcher:main
chopUpBackground.pl = homer2_ao._launcher:main
chopUpPeakFile.pl = homer2_ao._launcher:main
chopify.pl = homer2_ao._launcher:main
cleanUpPeakFile.pl = homer2_ao._launcher:main
cleanUpSequences.pl = homer2_ao._launcher:main
cluster2bed.pl = homer2_ao._launcher:main
cluster2bedgraph.pl = homer2_ao._launcher:main
combineGO.pl = homer2_ao._launcher:main
combineHubs.pl = homer2_ao._launcher:main
compareMotifMatrices = homer2_ao._launcher:main
compareMotifs.pl = homer2_ao._launcher:main
condenseBedGraph.pl = homer2_ao._launcher:main
configureHomer.pl = homer2_ao._launcher:main
cons2fasta.pl = homer2_ao._launcher:main
conservationAverage.pl = homer2_ao._launcher:main
conservationPerLocus.pl = homer2_ao._launcher:main
convertCoordinates.pl = homer2_ao._launcher:main
convertIDs.pl = homer2_ao._launcher:main
convertOrganismID.pl = homer2_ao._launcher:main
createHomer2EnrichmentTable.pl = homer2_ao._launcher:main
createIGVhtml.pl = homer2_ao._launcher:main
createScoredFasta.pl = homer2_ao._launcher:main
duplicateCol.pl = homer2_ao._launcher:main
eland2tags.pl = homer2_ao._launcher:main
fasta2tab.pl = homer2_ao._launcher:main
fastq2fasta.pl = homer2_ao._launcher:main
filterListBy.pl = homer2_ao._launcher:main
filterTADsAndCPs.pl = homer2_ao._launcher:main
filterTADsAndLoops.pl = homer2_ao._launcher:main
filterTagDirectory.pl = homer2_ao._launcher:main
findGO.pl = homer2_ao._launcher:main
findGOtxt.pl = homer2_ao._launcher:main
findHiCCompartments.pl = homer2_ao._launcher:main
findHiCDomains.pl = homer2_ao._launcher:main
findHiCInteractionsByChr.pl = homer2_ao._launcher:main
findKnownMotifs.pl = homer2_ao._launcher:main
findMotifs.pl = homer2_ao._launcher:main
findMotifsGenome.pl = homer2_ao._launcher:main
findPeaks = homer2_ao._launcher:main
findRedundantBLAT.pl = homer2_ao._launcher:main
findTADsAndLoops.pl = homer2_ao._launcher:main
findTADsAndLoopsFromRelMatrix = homer2_ao._launcher:main
findTopMotifs.pl = homer2_ao._launcher:main
findcsRNATSR.pl = homer2_ao._launcher:main
findcsRNATSS.pl = homer2_ao._launcher:main
flipPC1toMatch.pl = homer2_ao._launcher:main
freq2group.pl = homer2_ao._launcher:main
genericConvertIDs.pl = homer2_ao._launcher:main
genomeOntology = homer2_ao._launcher:main
getChrLengths.pl = homer2_ao._launcher:main
getConservedRegions.pl = homer2_ao._launcher:main
getDiffExpression.pl = homer2_ao._launcher:main
getDifferentialBedGraph.pl = homer2_ao._launcher:main
getDifferentialPeaks = homer2_ao._launcher:main
getDifferentialPeaksReplicates.pl = homer2_ao._launcher:main
getDistalPeaks.pl = homer2_ao._launcher:main
getFocalPeaks.pl = homer2_ao._launcher:main
getGWASoverlap.pl = homer2_ao._launcher:main
getGenesInCategory.pl = homer2_ao._launcher:main
getGenomeTilingPeaks = homer2_ao._launcher:main
getHiCcorrDiff.pl = homer2_ao._launcher:main
getHomerQCstats.pl = homer2_ao._launcher:main
getLikelyAdapters.pl = homer2_ao._launcher:main
getMappableRegions = homer2_ao._launcher:main
getMappingStats.pl = homer2_ao._launcher:main
getPartOfPromoter.pl = homer2_ao._launcher:main
getPeakTags = homer2_ao._launcher:main
getPos.pl = homer2_ao._launcher:main
getRandomReads.pl = homer2_ao._launcher:main
getSiteConservation.pl = homer2_ao._launcher:main
getTSSfromReads.pl = homer2_ao._launcher:main
getTopPeaks.pl = homer2_ao._launcher:main
gff2pos.pl = homer2_ao._launcher:main
go2cytoscape.pl = homer2_ao._launcher:main
groupSequences.pl = homer2_ao._launcher:main
homer = homer2_ao._launcher:main
homer2 = homer2_ao._launcher:main
homer2-ao = homer2_ao._launcher:info
homer2jaspar.pl = homer2_ao._launcher:main
homerTools = homer2_ao._launcher:main
joinFiles.pl = homer2_ao._launcher:main
loadGenome.pl = homer2_ao._launcher:main
loadPromoters.pl = homer2_ao._launcher:main
makeBigBedMotifTrack.pl = homer2_ao._launcher:main
makeBigWig.pl = homer2_ao._launcher:main
makeBinaryFile.pl = homer2_ao._launcher:main
makeHiCWashUfile.pl = homer2_ao._launcher:main
makeMetaGeneProfile.pl = homer2_ao._launcher:main
makeMultiWigHub.pl = homer2_ao._launcher:main
makeTagDirectory = homer2_ao._launcher:main
makeUCSCfile = homer2_ao._launcher:main
map-fastq.pl = homer2_ao._launcher:main
merge2Dbed.pl = homer2_ao._launcher:main
mergeData.pl = homer2_ao._launcher:main
mergePeaks = homer2_ao._launcher:main
motif2Jaspar.pl = homer2_ao._launcher:main
motif2Logo.pl = homer2_ao._launcher:main
pacifierHomer2.pl = homer2_ao._launcher:main
parseGTF.pl = homer2_ao._launcher:main
pos2bed.pl = homer2_ao._launcher:main
powerSpec.pl = homer2_ao._launcher:main
preparseGenome.pl = homer2_ao._launcher:main
profile2seq.pl = homer2_ao._launcher:main
qseq2fastq.pl = homer2_ao._launcher:main
randRemoveBackground.pl = homer2_ao._launcher:main
randomizeGroupFile.pl = homer2_ao._launcher:main
randomizeMotif.pl = homer2_ao._launcher:main
randomizeMotifs.pl = homer2_ao._launcher:main
removeAccVersion.pl = homer2_ao._launcher:main
removeBadSeq.pl = homer2_ao._launcher:main
removeOutOfBoundsReads.pl = homer2_ao._launcher:main
removePoorSeq.pl = homer2_ao._launcher:main
removeRedundantPeaks.pl = homer2_ao._launcher:main
renamePeaks.pl = homer2_ao._launcher:main
resizePosFile.pl = homer2_ao._launcher:main
revoppMotif.pl = homer2_ao._launcher:main
rotateHiCmatrix.pl = homer2_ao._launcher:main
runHiCpca.pl = homer2_ao._launcher:main
sam2spliceJunc.pl = homer2_ao._launcher:main
scanMotifGenomeWide.pl = homer2_ao._launcher:main
scrambleFasta.pl = homer2_ao._launcher:main
script-findAllTSS.pl = homer2_ao._launcher:main
selectRepeatBg.pl = homer2_ao._launcher:main
seq2profile.pl = homer2_ao._launcher:main
subtractBedGraphs.pl = homer2_ao._launcher:main
subtractBedGraphsDirectory.pl = homer2_ao._launcher:main
tab2fasta.pl = homer2_ao._launcher:main
tag2bed.pl = homer2_ao._launcher:main
tag2pos.pl = homer2_ao._launcher:main
tagDir2HiCsummary.pl = homer2_ao._launcher:main
tagDir2bed.pl = homer2_ao._launcher:main
tagDir2hicFile.pl = homer2_ao._launcher:main
zipHomerResults.pl = homer2_ao._launcher:main
