LICENSE
MANIFEST.in
README.md
pyproject.toml
requirements.txt
setup.py
cognitive/__init__.py
cognitive/algorithms/USE_soma_core_METRICS.py
cognitive/algorithms/__init__.py
cognitive/algorithms/graph_walker.py
cognitive/algorithms/nine_scorer.py
cognitive/algorithms/pattern_matcher.py
cognitive/algorithms/query_parser.py
cognitive/algorithms/semantic_similarity.py
cognitive/algorithms/soma_core_metrics.py
cognitive/algorithms/soma_ranker.py
cognitive/examples/__init__.py
cognitive/examples/numpy_gpt_integration.py
cognitive/graph/__init__.py
cognitive/graph/graph_edge.py
cognitive/graph/graph_node.py
cognitive/graph/graph_store.py
cognitive/graph/relation_extractor.py
cognitive/integration/__init__.py
cognitive/integration/cognitive_pipeline.py
cognitive/integration/embedding_bridge.py
cognitive/integration/token_bridge.py
cognitive/integration/vector_bridge.py
cognitive/memory/__init__.py
cognitive/memory/memory_object.py
cognitive/memory/unified_memory.py
cognitive/reasoning/__init__.py
cognitive/reasoning/contradiction_detector.py
cognitive/reasoning/explainer.py
cognitive/reasoning/hybrid_reasoner.py
cognitive/reasoning/inference_engine.py
cognitive/reasoning/path_finder.py
cognitive/reasoning/query_engine.py
cognitive/reasoning/rule_base.py
cognitive/reasoning/soma_reasoner.py
cognitive/reasoning/soma_verbalizer.py
cognitive/slm/__init__.py
cognitive/slm/fluency_enhancer.py
cognitive/slm/run_model.py
cognitive/slm/show_model.py
cognitive/slm/slm_constrained_decoder.py
cognitive/slm/slm_constraints.py
cognitive/slm/slm_generator.py
cognitive/slm/slm_trainer.py
cognitive/slm/small_slm.py
cognitive/slm/soma_gpt.py
cognitive/slm/soma_gpt5.py
cognitive/slm/soma_gpt_trainer.py
cognitive/slm/soma_gpt_trainer_real.py
cognitive/slm/soma_gpt_trainer_simple.py
cognitive/slm/soma_sequence_optimizer.py
cognitive/slm/soma_slm_model.py
cognitive/slm/test_small_slm.py
cognitive/slm/test_soma_model.py
cognitive/slm/tiny_slm.py
cognitive/slm/tiny_transformer.py
cognitive/slm/training_data.py
cognitive/trees/__init__.py
cognitive/trees/tree.py
cognitive/trees/tree_node.py
cognitive/trees/tree_store.py
cognitive/utils/__init__.py
cognitive/utils/formatting.py
cognitive/utils/scoring.py
cognitive/utils/validation.py
docs/ADVANCED_FEATURES_INTEGRATION_PLAN.md
docs/ADVANCED_TEST_ANALYSIS.md
docs/ALGORITHMS_DOCUMENTATION.md
docs/ALL_BUGS_FIXED_COMPLETE.md
docs/ALL_BUGS_FIXED_FINAL.md
docs/ALL_BUGS_FOUND.md
docs/ALL_BUGS_LIST.md
docs/ALL_BUGS_LIST_FIX.md
docs/ALL_COMPLETE.md
docs/ALL_FIXES_APPLIED.md
docs/ALL_IMPROVEMENTS_COMPLETE.md
docs/ALL_TODOS_COMPLETE.md
docs/BACKEND_CONNECTION_FIX_COMPLETE.md
docs/BRUTAL_COMPARISON.md
docs/BUGS_FIXED.md
docs/BUGS_FIXED_SUMMARY.md
docs/BUGS_LIST.md
docs/BUG_FIXES_COMPLETE.md
docs/BUG_REPORT_SUMMARY.md
docs/CODE_IMPROVEMENTS_SUMMARY.md
docs/CODE_LOCATIONS.md
docs/CODE_QUALITY_CHECKLIST.md
docs/COMPLETE_BUGS_LIST.md
docs/COMPLETE_BUG_LIST.md
docs/COMPLETE_IMPROVEMENTS_SUMMARY.md
docs/COMPLETE_INTEGRATION_SUMMARY.md
docs/COMPLETE_PYTHON_BUG_LIST.md
docs/COMPREHENSIVE_CODE_REVIEW.md
docs/COMPREHENSIVE_CODE_SCAN_REPORT.md
docs/COMPREHENSIVE_COMPARISON.md
docs/COMPREHENSIVE_COMPARISON_soma_VS_TOKENIZERS.md
docs/COMPREHENSIVE_COMPARISON_soma_VS_TRANSFORMERS.md
docs/CORS_FIX_RAILWAY.md
docs/DEMO_FOLDER_READY.md
docs/DEMO_READY_CONFIRMATION.md
docs/DEPENDENCIES_ANALYSIS.md
docs/DEPLOYMENT_CHECKLIST.md
docs/DEPLOYMENT_STATUS.md
docs/DEPLOYMENT_SUMMARY.md
docs/DETAILED_BUG_LIST.md
docs/DOCUMENTATION_ORCHESTRATION_SUMMARY.md
docs/EMAIL_ATTACHMENTS_REFERENCES.md
docs/EMAIL_TO_MANAGER.md
docs/EMBEDDING_INTEGRATION_COMPLETE.md
docs/EMBEDDING_SOURCE_EXPLANATION.md
docs/EMBEDDING_SYSTEM_DESIGN.md
docs/ENTRY_POINTS_GUIDE.md
docs/FAQ_UNIVERSAL_SUPPORT.md
docs/FILE_LOCATIONS.md
docs/FINAL_DEPLOYMENT_CHECKLIST.md
docs/FINAL_IMPROVEMENTS_REPORT.md
docs/FINAL_STATUS_REPORT.md
docs/FIXES_COMPLETE.md
docs/FOLDER_COMPARISON.md
docs/FRONTEND_BACKEND_CONNECTION_REPORT.md
docs/FRONTEND_BUGS_FIXED.md
docs/FRONTEND_UPDATES_COMPLETE.md
docs/GIT_PUSH_SUMMARY.md
docs/HONEST_ASSESSMENT.md
docs/HONEST_IEEE_PAPER.md
docs/HOW_EMBEDDINGS_WORK.md
docs/HOW_TO_GET_500K_TOKENS.md
docs/HOW_TO_RUN_SEMANTIC_EMBEDDINGS.md
docs/INFERENCE_READY_PLAN.md
docs/INTEGRATION_SUMMARY.md
docs/INTEGRATION_VERIFICATION.md
docs/INTERACTIVE_INPUT_FIX.md
docs/INTERACTIVE_INPUT_FIX_COMPLETE.md
docs/MEMORY_BUG_FIXED.md
docs/MOBILE_RESPONSIVE_FIXES.md
docs/NEXT_STEPS_ACTION_PLAN.md
docs/PRODUCTION_BUILD_FIX.md
docs/PRODUCTION_DEPLOYMENT.md
docs/PRODUCTION_ISSUES_REPORT.md
docs/PROJECT_STATUS.md
docs/PROJECT_UPDATE_SUMMARY.md
docs/PYPI_PUBLISHING_CHECKLIST.md
docs/PYTHON_CODE_STRUCTURE.md
docs/QUICK_START_SEMANTIC.md
docs/RAILWAY_BACKEND_CONNECTION_FIX.md
docs/RAILWAY_BACKEND_FIX.md
docs/RAILWAY_DEPLOYMENT_GUIDE.md
docs/RAILWAY_DEPLOYMENT_READY.md
docs/RAILWAY_ENV_VARS.md
docs/RAILWAY_ENV_VARS_TEMPLATE.md
docs/RAILWAY_SETUP_EXACT_VALUES.md
docs/README.md
docs/README_EMBEDDINGS.md
docs/README_SIMPLE.md
docs/REORGANIZATION_PLAN.md
docs/REORGANIZATION_PLAN_ROOT.md
docs/REORGANIZATION_SUMMARY.md
docs/RESTART_SERVER_FOR_ENDPOINTS.md
docs/SCAN_SUMMARY.md
docs/SEMANTIC_EMBEDDINGS_TRAINING.md
docs/SIDEBAR_FUNCTIONALITY_ADDED.md
docs/SIMPLE_GUIDE.md
docs/SOURCE_MAP_INTEGRATION_COMPLETE.md
docs/START_BACKEND.md
docs/TESTING_VOCABULARY_ADAPTER.md
docs/THE_BRUTAL_TRUTH.md
docs/TIMEOUT_FIX_COMPLETE.md
docs/TODO_COMPLETION_FINAL.md
docs/TODO_COMPLETION_REPORT.md
docs/TODO_COMPLETION_SUMMARY.md
docs/TROUBLESHOOTING_CONNECTION.md
docs/UPDATE_COMPLETE.md
docs/UTILITIES_USAGE_GUIDE.md
docs/VERIFICATION_REPORT.md
docs/VOCABULARY_ADAPTER_COMPLETE_GUIDE.md
docs/VOCABULARY_ADAPTER_TECHNICAL_PAPER.md
docs/VOCABULARY_COMPATIBILITY_ISSUE.md
docs/WHAT_EXISTS_VS_WHAT_DOESNT.md
docs/ZIP_CONTENTS_SUMMARY.md
docs/ZIP_README.md
docs/embeddings_logics_detailed.md
docs/embeddings_logics_pure_math.md
docs/soma_ACADEMIC_PAPER.md
docs/soma_EXPLAINED_SIMPLE.md
docs/soma_FOUNDATIONAL_VISION.md
docs/soma_GAMMA_PRESENTATION.md
docs/soma_PLAGIARISM_FREE_PAPER.md
docs/soma_PPT_CONTENT.md
docs/soma_PRESENTATION_INFO.md
docs/soma_PROBLEMS_AND_LIMITATIONS.md
docs/soma_PROFESSIONAL_PAPER.md
docs/soma_SOURCE_MAP.md
docs/soma_UNIVERSAL_FILE_SUPPORT.md
docs/soma_Universal_Tokenization_Framework.md
docs/token_logics.md
docs/token_logics_detailed.md
docs/token_logics_pure_math.md
docs/05-project-docs/01-Enhanced_Tokenization_Summary.md
docs/05-project-docs/02-Original_Project_Requirements.md
docs/05-project-docs/03-Beginner_Documentation_Summary.md
docs/05-project-docs/04-Tokenization_Math_Summary.md
docs/Compare/COMPREHENSIVE_COMPARISON_soma_VS_TOKENIZERS.md
docs/Compare/COMPREHENSIVE_COMPARISON_soma_VS_TRANSFORMERS.md
docs/archive/ALL_BUGS_FIXED.md
docs/archive/ALL_BUGS_FOUND.md
docs/archive/ALL_FILES_UPDATED_COMPLETE.md
docs/archive/BUGS_FIXED.md
docs/archive/BUGS_FIXED_COMPLETE.md
docs/archive/BUGS_FIXED_FINAL.md
docs/archive/BUGS_FIXED_SUMMARY.md
docs/archive/BUGS_LIST_COMPLETE.md
docs/archive/COMPLETE_FILE_VERIFICATION.md
docs/archive/COMPLETE_UPDATE_VERIFICATION.md
docs/archive/COMPREHENSIVE_BUG_CHECK.md
docs/archive/ENTIRE_CODEBASE_VERIFICATION_COMPLETE.md
docs/archive/FINAL_BUGS_FIXED.md
docs/archive/FIX_WEBSOCKET_CONNECTION.md
docs/archive/FULL_CODEBASE_VERIFICATION_COMPLETE.md
docs/archive/INTEGRATION_FIXES.md
docs/archive/INTEGRATION_ISSUES.md
docs/archive/PRODUCTION_BUGS_FIX.md
docs/archive/QUICK_FIX_SUMMARY.md
docs/archive/QUICK_FIX_WEBSOCKET.md
docs/archive/WEBSOCKET_FIX.md
docs/backend/ALL_BUGS_FIXED.md
docs/backend/ENTRY_POINT.md
docs/backend/Architecture_Docs/ARCHITECTURE.md
docs/backend/Architecture_Docs/ARCHITECTURE_DIAGRAM.md
docs/backend/Architecture_Docs/ARCHITECTURE_INDEX.md
docs/backend/Architecture_Docs/ARCHITECTURE_QUICK_REFERENCE.md
docs/backend/Architecture_Docs/ARCHITECTURE_SUMMARY.md
docs/backend/Architecture_Docs/START_HERE_ARCHITECTURE.md
docs/backend/src/servers/API_V2_DEBUG.md
docs/demo/DEMO_INSTRUCTIONS.md
docs/demo/DEMO_SUMMARY.md
docs/demo/FINAL_VERIFICATION.md
docs/demo/README_DEMO.md
docs/deployment/BACKEND_DEPLOY_INSTRUCTIONS.md
docs/deployment/DEPENDENCY_RESOLUTION_GUIDE.md
docs/deployment/DISTRIBUTION_SETUP_COMPLETE.md
docs/deployment/FINAL_DEPLOYMENT_STATUS.md
docs/deployment/HOSTINGER_DEPLOYMENT_GUIDE.md
docs/deployment/HOSTINGER_DEPLOYMENT_PLAN.md
docs/deployment/HOSTINGER_QUESTIONS.md
docs/deployment/PRODUCTION_FILES_COPIED.md
docs/deployment/RAILWAY_DEPLOYMENT_FIX.md
docs/development/CLI_USAGE.md
docs/development/GIT_WORK_SUMMARY.md
docs/development/INSTALLATION.md
docs/development/POWERSHELL_NOTES.md
docs/development/PYTHON_COMMANDS_WORKING.md
docs/development/PYTHON_SETUP_COMPLETE.md
docs/development/QUICK_START.md
docs/development/START_BACKEND.md
docs/development/TEAM_ONBOARDING.md
docs/development/TRAINING_ENDPOINTS_VERIFICATION.md
docs/development/WHERE_TO_LOOK.md
docs/enhanced_semantic_trainer/FEATURES.md
docs/enhanced_semantic_trainer/IMPLEMENTATION.md
docs/examples/HONEST_ANSWER.md
docs/examples/PRACTICAL_USES.md
docs/examples/QUICK_GUIDE.md
docs/examples/TEST_RESULTS.md
docs/examples/UNDERSTANDING_RESULTS.md
docs/examples/VERIFICATION_REPORT.md
docs/examples/WHAT_CAN_YOU_DO.md
docs/examples/WORKFLOW_DETAILED.md
docs/frontend/ENHANCEMENTS_SUMMARY.md
docs/frontend/PROJECT_SUMMARY.md
docs/frontend/README_ENHANCEMENTS.md
docs/frontend/fix-build-issues.md
docs/frontend_v2/COMPLETE_SUMMARY.md
docs/frontend_v2/DEVELOPMENT_PLAN.md
docs/frontend_v2/NEXT_STEPS.md
docs/frontend_v2/SETUP_COMPLETE.md
docs/frontend_v2/SUMMARY.md
docs/guides/ADVANCED_TRAINING_FEATURES.md
docs/guides/BACKEND_INTEGRATION_GUIDE.md
docs/guides/GET_REAL_DATA_QUICK_START.md
docs/guides/GPT5_IMPLEMENTATION_ROADMAP.md
docs/guides/MANGA_ANIME_TRAINING_GUIDE.md
docs/guides/MULTI_MODEL_SYSTEM.md
docs/guides/QUICK_SUMMARY.md
docs/guides/RAILWAY_OPERATIONS_GUIDE.md
docs/guides/RAILWAY_PRO_QUICK_START.md
docs/guides/RAILWAY_TRAINING_GUIDE.md
docs/guides/RAM_MANAGEMENT_GUIDE.md
docs/guides/REAL_DATA_QUICK_START.md
docs/guides/REAL_DATA_TRAINING_GUIDE.md
docs/guides/SYSTEM_ANALYSIS.md
docs/guides/SYSTEM_DETAILS.md
docs/guides/TRAINING_SUCCESS_ANALYSIS.md
docs/guides/TRAIN_REAL_LLM_NOW.md
docs/guides/TRAIN_REAL_LLM_RAILWAY_PRO.md
docs/guides/soma_CODEBASE_ANALYSIS.md
docs/guides/soma_CORRECT_PATH_FORWARD.md
docs/guides/soma_EMBEDDINGS_GUIDE.md
docs/guides/soma_GPT5_ARCHITECTURE.md
docs/guides/soma_LLM_V1_SPEC.md
docs/guides/soma_ROADMAP_MAXIMIZE_UNIQUENESS.md
docs/guides/soma_SLM_README.md
docs/guides/soma_TOKENIZATION_GUIDE.md
docs/guides/soma_UNIQUE_VALUE_ANALYSIS.md
docs/guides/soma_core_METRICS_GUIDE.md
docs/guides/soma_core_METRICS_SUMMARY.md
docs/guides/soma_core_STRUCTURE_COMPLETE.md
docs/guides/soma_core_STRUCTURE_SYSTEM_SUMMARY.md
docs/n8n/BUGS-FIXED-LIST.md
docs/n8n/BUGS-FIXED.md
docs/n8n/BUGS.md
docs/n8n/EASIEST-WAY.md
docs/n8n/EXECUTE-WORKFLOW.md
docs/n8n/FAST-IMPORT.md
docs/n8n/HOW-TO-EXECUTE.md
docs/n8n/HOW-TO-USE-ADVANCED.md
docs/n8n/HOW-TO-USE-ENHANCED.md
docs/n8n/QUICKSTART.md
docs/n8n/README-EXISTING-N8N.md
docs/n8n/START-HERE.md
docs/n8n/START-SIMPLE.md
docs/n8n/TOKENIZER-NAMES.md
docs/papers/Comparsion_TOKENIZATION_ANALYSIS.md
docs/papers/HONEST_IEEE_PAPER.md
docs/papers/PROFESSIONAL_IEEE_PAPER.md
docs/performance/DECODING_GUIDE.md
docs/performance/PERFORMANCE_WARNINGS.md
docs/railway/RAILWAY_CHECK_COMPLETE.md
docs/railway/RAILWAY_SETUP_COMPLETE.md
docs/weaviate/QUICK_START.md
docs/weaviate/SUMMARY.md
docs/weaviate/tokenization math logical.md
examples/compare_neighbors.py
examples/comprehensive_vector_store_example.py
examples/comprehensive_vector_store_example2.py
examples/embedding_example.py
examples/eval_embedding_quality.py
examples/guided_training_demo.py
examples/integrate_source_map_workflow.py
examples/integration_with_transformers.py
examples/quick_start_integration.py
examples/search_examples.py
examples/simple_tiny_slm.py
examples/soma_with_tiny_slm.py
examples/test_data_interpreter.py
examples/test_full_workflow_500k.py
examples/test_soma_source_map.py
examples/train_semantic_embeddings.py
examples/train_soma_60k_vocab.py
examples/use_semantic_embeddings.py
examples/use_vector_store.py
semantic_trainer/__init__.py
semantic_trainer/enhanced_trainer.py
semantic_trainer/example_train.py
semantic_trainer/example_use.py
semantic_trainer/examples/advanced_usage.py
semantic_trainer/examples/basic_usage.py
semantic_trainer/examples/compare_with_basic.py
soma/__init__.py
soma/cli.py
soma/soma.py
soma/utils/__init__.py
soma/utils/config.py
soma/utils/logging_config.py
soma/utils/validation.py
soma_core/embeddings.py
soma_core/pattern_builder.py
soma_core/similarity.py
soma_core/simple_metrics.py
soma_core/structure_hierarchy.py
soma_core/symbol_structures.py
soma_core/token_record.py
soma_core/tokenizer.py
soma_core/train_embeddings.py
somaya.egg-info/PKG-INFO
somaya.egg-info/SOURCES.txt
somaya.egg-info/dependency_links.txt
somaya.egg-info/entry_points.txt
somaya.egg-info/requires.txt
somaya.egg-info/top_level.txt
src/__init__.py
src/soma_sources.py
src/cli/__init__.py
src/cli/decode_demo.py
src/cli/main.py
src/compression/__init__.py
src/compression/compression_algorithms.py
src/core/__init__.py
src/core/base_tokenizer.py
src/core/core_tokenizer.py
src/core/parallel_tokenizer.py
src/embeddings/__init__.py
src/embeddings/embedding_generator.py
src/embeddings/inference_pipeline.py
src/embeddings/semantic_trainer.py
src/embeddings/vector_store.py
src/embeddings/weaviate_vector_store.py
src/examples/__init__.py
src/examples/demo_enhanced_tokenization.py
src/examples/demo_stable_system.py
src/examples/demo_universal_files.py
src/examples/evaluate_semantics.py
src/integration/__init__.py
src/integration/source_map_integration.py
src/integration/vocabulary_adapter.py
src/interpretation/__init__.py
src/interpretation/data_interpreter.py
src/performance/__init__.py
src/performance/comprehensive_performance_test.py
src/performance/test_accuracy.py
src/performance/test_organized_outputs.py
src/servers/__init__.py
src/servers/admin_config.py
src/servers/api_server.py
src/servers/error_handling.py
src/servers/job_manager.py
src/servers/lightweight_server.py
src/servers/main_server.py
src/servers/simple_server.py
src/structure/__init__.py
src/structure/advanced_patterns.py
src/structure/decision_gates.py
src/structure/deep_reasoning.py
src/structure/fluency_understanding.py
src/structure/multi_model.py
src/structure/multi_model_clean.py
src/structure/multi_model_demo.py
src/structure/multi_model_demo_clean.py
src/structure/pattern_builder.py
src/structure/relationship_graph.py
src/structure/scoring_utils.py
src/structure/soma_integration.py
src/structure/structure_enhanced_tokenizer.py
src/structure/structure_hierarchy.py
src/structure/structure_optimizer.py
src/structure/symbol_structures.py
src/structure/test_integration.py
src/tests/__init__.py
src/tests/advanced_comprehensive_test.py
src/tests/extreme_stress_test.py
src/tests/real_time_monitor.py
src/tests/run_tests.py
src/tests/test_multilang_parallel.py
src/tests/test_scripts/test_comprehensive.py
src/tests/test_scripts/test_compression_efficiency.py
src/tests/test_scripts/test_full_reversibility.py
src/tests/test_scripts/test_stable_tokenization.py
src/training/__init__.py
src/training/dataset_downloader.py
src/training/guided_training_pipeline.py
src/training/language_model_trainer.py
src/training/vocabulary_builder.py
src/utils/__init__.py
src/utils/unique_identifier.py
tests/test_vocabulary_adapter_backend.py
training_data/combined_training_data.txt
training_data/books/book_11.txt
training_data/books/book_1232.txt
training_data/books/book_1342.txt
training_data/books/book_158.txt
training_data/books/book_160.txt
training_data/books/book_16328.txt
training_data/books/book_1661.txt
training_data/books/book_174.txt
training_data/books/book_1952.txt
training_data/books/book_2554.txt
training_data/books/book_2591.txt
training_data/books/book_2701.txt
training_data/books/book_30254.txt
training_data/books/book_345.txt
training_data/books/book_5200.txt
training_data/books/book_6130.txt
training_data/books/book_74.txt
training_data/books/book_76.txt
training_data/books/book_84.txt
training_data/books/book_98.txt