LICENSE.txt
MANIFEST.in
PACKAGE_README.md
README.md
pyproject.toml
setup.py
examples/basic_usage.py
src/__init__.py
src/codebase/__init__.py
src/codebase/augment_text.py
src/codebase/eval_zero_shot_clip.py
src/codebase/metrics.py
src/codebase/train.py
src/codebase/train_classifier.py
src/codebase/train_detector.py
src/codebase/utils.py
src/codebase/Classifiers/__init__.py
src/codebase/Classifiers/experiments.py
src/codebase/Classifiers/models/__init__.py
src/codebase/Classifiers/models/breast_clip_classifier.py
src/codebase/Datasets/__init__.py
src/codebase/Datasets/dataset_concepts.py
src/codebase/Datasets/dataset_utils.py
src/codebase/Detectors/__init__.py
src/codebase/Detectors/detectors_utils.py
src/codebase/Detectors/experiments.py
src/codebase/Detectors/retinanet/__init__.py
src/codebase/Detectors/retinanet/anchors.py
src/codebase/Detectors/retinanet/detector_model.py
src/codebase/Detectors/retinanet/efficient_net.py
src/codebase/Detectors/retinanet/efficientnet_utils.py
src/codebase/Detectors/retinanet/losses.py
src/codebase/breastclip/__init__.py
src/codebase/breastclip/evaluator.py
src/codebase/breastclip/trainer.py
src/codebase/breastclip/trainer_ddp.py
src/codebase/breastclip/validator.py
src/codebase/breastclip/data/__init__.py
src/codebase/breastclip/data/data_utils.py
src/codebase/breastclip/data/datamodule.py
src/codebase/breastclip/data/datasets/__init__.py
src/codebase/breastclip/data/datasets/image_aligner.py
src/codebase/breastclip/data/datasets/image_classification.py
src/codebase/breastclip/data/datasets/image_classification_zs.py
src/codebase/breastclip/data/datasets/imagetext.py
src/codebase/breastclip/data/datasets/imagetext_contrastive.py
src/codebase/breastclip/data/datasets/imagetext_retrieval.py
src/codebase/breastclip/data/datasets/imagetext_zz.py
src/codebase/breastclip/data/datasets/prompts.json
src/codebase/breastclip/data/datasets/prompts_all.json
src/codebase/breastclip/loss/__init__.py
src/codebase/breastclip/loss/breast_clip.py
src/codebase/breastclip/loss/breast_clip_contrastive.py
src/codebase/breastclip/loss/classification.py
src/codebase/breastclip/loss/combined_loss.py
src/codebase/breastclip/model/__init__.py
src/codebase/breastclip/model/clip.py
src/codebase/breastclip/model/image_classification.py
src/codebase/breastclip/model/mamo_efficient_net.py
src/codebase/breastclip/model/modules/__init__.py
src/codebase/breastclip/model/modules/efficient_net_custom_utils.py
src/codebase/breastclip/model/modules/efficientnet_custom.py
src/codebase/breastclip/model/modules/image_classifier.py
src/codebase/breastclip/model/modules/image_encoder.py
src/codebase/breastclip/model/modules/projection.py
src/codebase/breastclip/model/modules/text_encoder.py
src/codebase/breastclip/optimizer/__init__.py
src/codebase/breastclip/prompts/__init__.py
src/codebase/breastclip/prompts/prompts.py
src/codebase/breastclip/scheduler/__init__.py
src/codebase/breastclip/scheduler/warmup_cosine.py
src/codebase/breastclip/util/__init__.py
src/codebase/breastclip/util/dist_autograd.py
src/codebase/breastclip/util/dist_summery_writer.py
src/codebase/breastclip/util/global_env.py
src/codebase/breastclip/util/utils.py
src/codebase/configs/pre_train_b2_clip.yaml
src/codebase/configs/pre_train_b5_clip.yaml
src/codebase/configs/pre_train_b5_w_vindr_clip.yaml
src/codebase/configs/zs_clip.yaml
src/codebase/configs/data_test/rsna.yaml
src/codebase/configs/data_test/rsna_zs.yaml
src/codebase/configs/data_test/upmc_image_text_retrieval.yaml
src/codebase/configs/data_test/vindr_zs.yaml
src/codebase/configs/data_train/rsna.yaml
src/codebase/configs/data_train/upmc.yaml
src/codebase/configs/data_train/upmc_wo_period.yaml
src/codebase/configs/data_train/vindr_wo_period.yaml
src/codebase/configs/data_zs/rsna_zs.yaml
src/codebase/configs/data_zs/upmc_zs.yaml
src/codebase/configs/dataloader/dataloader_4.yaml
src/codebase/configs/dataloader/dataloader_6.yaml
src/codebase/configs/dataloader/dataloader_aligner.yaml
src/codebase/configs/dataloader/dataloader_b5.yaml
src/codebase/configs/loss/breast_clip.yaml
src/codebase/configs/loss/breast_clip_contrastive.yaml
src/codebase/configs/loss/classification.yaml
src/codebase/configs/model/clip_b2_det_clinical.yaml
src/codebase/configs/model/clip_b5_det_clinical.yaml
src/codebase/configs/model/efficientnet_classification.yaml
src/codebase/configs/optimizer/adamw.yaml
src/codebase/configs/scheduler/cosine_epoch10_warmup1.yaml
src/codebase/configs/scheduler/cosine_epoch15_warmup1.yaml
src/codebase/configs/scheduler/cosine_epoch300_warmup3.yaml
src/codebase/configs/scheduler/cosine_epoch30_warmup3.yaml
src/codebase/configs/tokenizer/clinical_bert.yaml
src/codebase/configs/train_clip/train_swin_upmc_contrastive.yaml
src/codebase/configs/transform/clahe.yaml
src/codebase/data_csv/breast-level_annotations.csv
src/codebase/data_csv/clip_pretrain_100.csv
src/codebase/data_csv/clip_vindr_final.csv
src/codebase/data_csv/finding_annotations.csv
src/codebase/data_csv/train_folds.csv
src/codebase/data_csv/upmc_dicom_consolidated_final_folds_BIRADS_num_1_report.csv
src/codebase/data_csv/vindr_detection_v1_folds.csv
src/codebase/notebooks/Mammo-Factor/Mammo-Factor.ipynb
src/codebase/notebooks/Mammo-Factor/seed_10_train_configs.pkl
src/codebase/notebooks/Tutorial/Downstream_classifier_tutorial.ipynb
src/codebase/notebooks/Tutorial/Get_Embedding_Vision_encoder_Mammo_CLIP_tutorial.ipynb
src/codebase/notebooks/Tutorial/.ipynb_checkpoints/Downstream_classifier_tutorial-checkpoint.ipynb
src/codebase/notebooks/Tutorial/.ipynb_checkpoints/Get_Embedding_Vision_encoder_Mammo_CLIP_tutorial-checkpoint.ipynb
src/codebase/notebooks/preprocess-clip/VinDr.ipynb
src/codebase/notebooks/preprocess-clip/.ipynb_checkpoints/VinDr-checkpoint.ipynb
src/codebase/notebooks/preprocess-clip/.ipynb_checkpoints/upmc-img-text-checkpoint.ipynb
src/mammoclip/__init__.py
src/mammoclip/cli.py
src/mammoclip/inference.py
src/mammoclip/model_downloader.py
src/mammoclip/model_loader.py
src/mammoclip/utils.py
src/mammoclip.egg-info/PKG-INFO
src/mammoclip.egg-info/SOURCES.txt
src/mammoclip.egg-info/dependency_links.txt
src/mammoclip.egg-info/entry_points.txt
src/mammoclip.egg-info/not-zip-safe
src/mammoclip.egg-info/requires.txt
src/mammoclip.egg-info/top_level.txt
src/preprocessing/preprocess_VinDr_detector.py
src/preprocessing/preprocess_image_to_png_kaggle.py
src/preprocessing/preprocess_image_to_png_vindr.py
src/scripts/augment_text.sh
src/scripts/classifier_fine_tune_b2.sh
src/scripts/classifier_fine_tune_b5.sh
src/scripts/classifier_linear_probe_b2.sh
src/scripts/classifier_linear_probe_b5.sh
src/scripts/detector_fine_tune_b2.sh
src/scripts/detector_fine_tune_b5.sh
src/scripts/detector_linear_probe_b2.sh
src/scripts/detector_linear_probe_b5.sh
src/scripts/pretrain_mammo_clip_b2.sh
src/scripts/pretrain_mammo_clip_b2_ddp.sh
src/scripts/pretrain_mammo_clip_b5.sh
src/scripts/pretrain_mammo_clip_b5_ddp.sh
src/scripts/pretrain_mammo_clip_w_vindr_b5.sh