LICENSE
README.md
pyproject.toml
setup.py
bin/rrap
bin/rrap_test
src/rrap/__init__.py
src/rrap/concatenator.py
src/rrap/controller.py
src/rrap/indexer.py
src/rrap/read_recruiter.py
src/rrap/visualizer.py
src/rrap.egg-info/PKG-INFO
src/rrap.egg-info/SOURCES.txt
src/rrap.egg-info/dependency_links.txt
src/rrap.egg-info/not-zip-safe
src/rrap.egg-info/requires.txt
src/rrap.egg-info/top_level.txt
tests/metaGs/dir_01/ERR864073_toy_R1.fastq
tests/metaGs/dir_01/ERR864073_toy_R2.fastq
tests/metaGs/dir_01/ERR864077_toy_R1.fastq
tests/metaGs/dir_01/ERR864077_toy_R2.fastq
tests/metaGs/dir_02/SRR11803378_toy_R1.fastq
tests/metaGs/dir_02/SRR11803378_toy_R2.fastq
tests/output/allgenomes_cat_test.fna
tests/output/allgenomes_cat_val.fna
tests/output/total_reads_val.csv
tests/output/bam/test/ERR864077.bam
tests/output/bam/test/ERR864077.bam.bai
tests/output/bam/test/SRR11803378.bam
tests/output/bam/test/SRR11803378.bam.bai
tests/output/bam/val/ERR864073.bam
tests/output/bam/val/ERR864073.bam.bai
tests/output/bam/val/ERR864077.bam
tests/output/bam/val/ERR864077.bam.bai
tests/output/bam/val/SRR11803378.bam
tests/output/bam/val/SRR11803378.bam.bai
tests/output/index/test/test.1.bt2
tests/output/index/test/test.2.bt2
tests/output/index/test/test.3.bt2
tests/output/index/test/test.4.bt2
tests/output/index/test/test.rev.1.bt2
tests/output/index/test/test.rev.2.bt2
tests/output/index/val/val.1.bt2
tests/output/index/val/val.2.bt2
tests/output/index/val/val.3.bt2
tests/output/index/val/val.4.bt2
tests/output/index/val/val.rev.1.bt2
tests/output/index/val/val.rev.2.bt2
tests/output/rpkm/test/test_rpkm_noLog.csv
tests/output/rpkm/val/val_rpkm_log10.csv
tests/output/rpkm/val/val_rpkm_noLog.csv
tests/output/stats/test/ERR864077.bam.stats
tests/output/stats/test/SRR11803378.bam.stats
tests/output/stats/val/ERR864073.bam.stats
tests/output/stats/val/ERR864077.bam.stats
tests/output/stats/val/SRR11803378.bam.stats
tests/reference/HIMB59.fasta
tests/reference/HTCC1062.fasta