DAY-EC activated.
DAY-EC activated.
=== status ===
{
  "command": "bin/day_run produce_illumina_run_qc_and_bclconvert -p -j 20 -k --config run_context_file=config/runs.tsv samples_table=.test_data/data/bclconvert/samples.tsv units_table=.test_data/data/bclconvert/units.tsv",
  "completed_at": "2026-05-30T02:29:48Z",
  "exit_code": 1,
  "repo_path": "/fsx/analysis_results/ubuntu/ccv20260529r10_illumina_run_qc_bclconvert/daylily-omics-analysis",
  "session_name": "ccv20260529r10_illumina_run_qc_bclconvert",
  "started_at": "2026-05-30T02:22:53Z"
}
=== repo ===
/fsx/analysis_results/ubuntu/ccv20260529r10_illumina_run_qc_bclconvert/daylily-omics-analysis
=== latest snakemake logs ===
1780108187.0000000000 .snakemake/log/2026-05-30T022315.738263.snakemake.log
1780108189.0000000000 .snakemake/log/2026-05-30T022948.778658.snakemake.log
=== latest log path: .snakemake/log/2026-05-30T022948.778658.snakemake.log ===
1:WorkflowError in file /fsx/analysis_results/ubuntu/ccv20260529r10_illumina_run_qc_bclconvert/daylily-omics-analysis/workflow/rules/common.smk, line 426:
=== latest log tail ===
WorkflowError in file /fsx/analysis_results/ubuntu/ccv20260529r10_illumina_run_qc_bclconvert/daylily-omics-analysis/workflow/rules/common.smk, line 426:
The units table was not found at /fsx/analysis_results/ubuntu/ccv20260529r10_illumina_run_qc_bclconvert/daylily-omics-analysis/config/units.tsv. Create config/units.tsv or set --config units_table=/path/to/units.tsv.
  File "/fsx/analysis_results/ubuntu/ccv20260529r10_illumina_run_qc_bclconvert/daylily-omics-analysis/workflow/Snakefile", line 66, in <module>
  File "/fsx/analysis_results/ubuntu/ccv20260529r10_illumina_run_qc_bclconvert/daylily-omics-analysis/workflow/rules/global_common.smk", line 151, in <module>
  File "/fsx/analysis_results/ubuntu/ccv20260529r10_illumina_run_qc_bclconvert/daylily-omics-analysis/workflow/rules/common.smk", line 1089, in <module>
  File "/fsx/analysis_results/ubuntu/ccv20260529r10_illumina_run_qc_bclconvert/daylily-omics-analysis/workflow/rules/common.smk", line 426, in _load_units_table
=== rule logs with errors ===
results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/logs/bclconvert_validate_inputs.log:2:ERROR: Sample_ID HG001-a at line 21 is not present in samples.tsv
