DAY-EC activated.
DAY-EC activated.
samtools=/fsx/resources/environments/conda/ubuntu/ip-10-0-0-88/1142d6cbdb634d9e332e99dc4820c6a0_/bin/samtools
reference=/fsx/references/genomic_data/organism_references/H_sapiens/hg38_broad/Homo_sapiens_assembly38.fasta
=== /fsx/references/genomic_data/organism_reads_slim/cram/H_sapiens/giab/agbt_2026/ug/HG003_5x.cleaned.cram ===
-rwxr-xr-x 1 root root 7.8G May 26 18:05 /fsx/references/genomic_data/organism_reads_slim/cram/H_sapiens/giab/agbt_2026/ug/HG003_5x.cleaned.cram
-rwxr-xr-x 1 root root 134K May 26 18:06 /fsx/references/genomic_data/organism_reads_slim/cram/H_sapiens/giab/agbt_2026/ug/HG003_5x.cleaned.cram.crai
chr1	248956422	5177423	0
chr2	242193529	5012125	0
chr3	198295559	4250826	0
chr4	190214555	4087136	0
chr5	181538259	3795100	0
chr6	170805979	3568447	0
chr7	159345973	3265749	0
chr8	145138636	3010636	0
idxstats_rows=3367
1402692
SN:chr1
SN:chr2
SN:chr3
SN:chr4
SN:chr5
SN:chr6
SN:chr7
SN:chr8
