DAY-EC activated.
DAY-EC activated.
## session
session=ccv20260529r26_illumina_hg002_kitchensink_multiqc
repo=/fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis
## newest files
1780126863.0000000000 29 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/.snakemake/log/2026-05-30T074100.668258.snakemake.log
1780126863.0000000000 1295 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/unlock_fails.log
1780126861.0000000000 27970 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/logs/about.log
1780126861.0000000000 0 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/.jemalloc_loc
1780126860.0000000000 9506 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/pipeline_workflow_final_failed.pdf
1780126859.0000000000 864851 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/.snakemake/log/2026-05-30T065050.641034.snakemake.log
1780126859.0000000000 275 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/DYMEMBERS
1780126859.0000000000 20 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/daylily.failed_run
1780126859.0000000000 121748 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/pipeline_workflow_final_failed.mmd
1780126852.0000000000 7702 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/.snakemake/metadata/cmVzdWx0cy9kYXkvaGczOC9vdGhlcl9yZXBvcnRzL2dpYWJfY29uY29yZGFuY2VfbXFjLnRzdg==
1780126852.0000000000 18744 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/results/day/hg38/other_reports/giab_concordance_mqc.tsv
1780126849.0000000000 90 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/results/day/hg38/JEMILMN0P1-HG002-0p1x-1-D0-PF-ILMN-NOVASEQ/align/sent/dmd/snv/sentd/concordance/concordance.fin.cmds
1780126849.0000000000 311 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/results/day/hg38/JEMILMN0P1-HG002-0p1x-1-D0-PF-ILMN-NOVASEQ/benchmarks/JEMILMN0P1-HG002-0p1x-1-D0-PF-ILMN-NOVASEQ.sent.dmd.sentd.concordance.bench.tsv
1780126849.0000000000 2295 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/results/day/hg38/JEMILMN0P1-HG002-0p1x-1-D0-PF-ILMN-NOVASEQ/align/sent/dmd/snv/sentd/concordance/concordance.fofn
1780126849.0000000000 12726 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/.snakemake/metadata/cmVzdWx0cy9kYXkvaGczOC9KRU1JTE1OMFAxLUhHMDAyLTBwMXgtMS1EMC1QRi1JTE1OLU5PVkFTRVEvYWxpZ24vc2VudC9kbWQvc252L3NlbnRkL2NvbmNvcmRhbmNlL2NvbmNvcmRhbmNlLmZvZm4=
1780126849.0000000000 12726 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/.snakemake/metadata/cmVzdWx0cy9kYXkvaGczOC9KRU1JTE1OMFAxLUhHMDAyLTBwMXgtMS1EMC1QRi1JTE1OLU5PVkFTRVEvYWxpZ24vc2VudC9kbWQvc252L3NlbnRkL2NvbmNvcmRhbmNlL2NvbmNvcmRhbmNlLmZpbi5jbWRz
1780126849.0000000000 12726 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/.snakemake/metadata/cmVzdWx0cy9kYXkvaGczOC9KRU1JTE1OMFAxLUhHMDAyLTBwMXgtMS1EMC1QRi1JTE1OLU5PVkFTRVEvYWxpZ24vc2VudC9kbWQvc252L3NlbnRkL2NvbmNvcmRhbmNlL2NvbmNvcmRhbmNlLmRvbmU=
1780126849.0000000000 0 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/results/day/hg38/JEMILMN0P1-HG002-0p1x-1-D0-PF-ILMN-NOVASEQ/align/sent/dmd/snv/sentd/concordance/concordance.done
1780126847.0000000000 10358 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/logs/slurm/prep_for_concordance_check/prep_for_concordance_check.JEMILMN0P1-HG002-0p1x-1-D0-PF-ILMN-NOVASEQ.131.err
1780126846.0000000000 184 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/results/day/hg38/JEMILMN0P1-HG002-0p1x-1-D0-PF-ILMN-NOVASEQ/align/sent/dmd/snv/sentd/concordance/logs/JEMILMN0P1-HG002-0p1x-1-D0-PF-ILMN-NOVASEQ.sent.dmd.sentd.concordance.log
1780126840.0000000000 0 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/logs/slurm/prep_for_concordance_check/prep_for_concordance_check.JEMILMN0P1-HG002-0p1x-1-D0-PF-ILMN-NOVASEQ.131.out
1780126839.0000000000 604889 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/sbatch_errs.log
1780126839.0000000000 5052 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/.snakemake/metadata/cmVzdWx0cy9kYXkvaGczOC9KRU1JTE1OMFAxLUhHMDAyLTBwMXgtMS1EMC1QRi1JTE1OLU5PVkFTRVEvYWxpZ24vc2VudC9kbWQvc252L3NlbnRkL2NvbmNvcmRhbmNlL19naWFiSEN2NXEvc252X0pFTUlMTU4wUDEtSEcwMDItMHAxeC0xLUQwLVBGLUlMTU4tTk9WQVNFUV9naWFiSEN2NXFfY29uY29yZGFuY2UubXFjLnRzdg==
1780126839.0000000000 313 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/results/day/hg38/JEMILMN0P1-HG002-0p1x-1-D0-PF-ILMN-NOVASEQ/benchmarks/JEMILMN0P1-HG002-0p1x-1-D0-PF-ILMN-NOVASEQ.sent.dmd.sentd.giabHCv5q.parse_vcfeval_summary.bench.tsv
1780126839.0000000000 2030 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/results/day/hg38/JEMILMN0P1-HG002-0p1x-1-D0-PF-ILMN-NOVASEQ/align/sent/dmd/snv/sentd/concordance/_giabHCv5q/snv_JEMILMN0P1-HG002-0p1x-1-D0-PF-ILMN-NOVASEQ_giabHCv5q_concordance.mqc.tsv
1780126831.0000000000 72 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/results/day/hg38/JEMILMN0P1-HG002-0p1x-1-D0-PF-ILMN-NOVASEQ/align/sent/dmd/snv/sentd/concordance/_giabHCv5q/fn_vcf_gz_stripped.vcf.gz.X_indel_gt50.vcf.gz.tbi
1780126831.0000000000 6586 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/results/day/hg38/JEMILMN0P1-HG002-0p1x-1-D0-PF-ILMN-NOVASEQ/align/sent/dmd/snv/sentd/concordance/logs/JEMILMN0P1-HG002-0p1x-1-D0-PF-ILMN-NOVASEQ.sent.dmd.sentd.giabHCv5q.parse_vcfeval_summary.log
1780126831.0000000000 5284 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/logs/slurm/parse_vcfeval_summary_roi/parse_vcfeval_summary_roi.JEMILMN0P1-HG002-0p1x-1-D0-PF-ILMN-NOVASEQ.144.err
1780126831.0000000000 207 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/results/day/hg38/JEMILMN0P1-HG002-0p1x-1-D0-PF-ILMN-NOVASEQ/align/sent/dmd/snv/sentd/concordance/_giabHCv5q/fn.count
1780126830.0000000000 72 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/results/day/hg38/JEMILMN0P1-HG002-0p1x-1-D0-PF-ILMN-NOVASEQ/align/sent/dmd/snv/sentd/concordance/_giabHCv5q/fn_vcf_gz_stripped.vcf.gz.X_ins_gt50.vcf.gz.tbi
1780126830.0000000000 72 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/results/day/hg38/JEMILMN0P1-HG002-0p1x-1-D0-PF-ILMN-NOVASEQ/align/sent/dmd/snv/sentd/concordance/_giabHCv5q/fn_vcf_gz_stripped.vcf.gz.X_del_gt50.vcf.gz.tbi
1780126830.0000000000 21592 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/results/day/hg38/JEMILMN0P1-HG002-0p1x-1-D0-PF-ILMN-NOVASEQ/align/sent/dmd/snv/sentd/concordance/_giabHCv5q/fn_vcf_gz_stripped.vcf.gz.X_indel_50.vcf.gz.tbi
1780126830.0000000000 1130530 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/results/day/hg38/JEMILMN0P1-HG002-0p1x-1-D0-PF-ILMN-NOVASEQ/align/sent/dmd/snv/sentd/concordance/_giabHCv5q/fn_vcf_gz_stripped.vcf.gz.X_ins_50.vcf.gz.tbi
1780126829.0000000000 1430172 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/results/day/hg38/JEMILMN0P1-HG002-0p1x-1-D0-PF-ILMN-NOVASEQ/align/sent/dmd/snv/sentd/concordance/_giabHCv5q/fn_vcf_gz_stripped.vcf.gz.X_ts_snp.vcf.gz.tbi
1780126829.0000000000 1101131 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/results/day/hg38/JEMILMN0P1-HG002-0p1x-1-D0-PF-ILMN-NOVASEQ/align/sent/dmd/snv/sentd/concordance/_giabHCv5q/fn_vcf_gz_stripped.vcf.gz.X_del_50.vcf.gz.tbi
1780126827.0000000000 1326429 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/results/day/hg38/JEMILMN0P1-HG002-0p1x-1-D0-PF-ILMN-NOVASEQ/align/sent/dmd/snv/sentd/concordance/_giabHCv5q/fn_vcf_gz_stripped.vcf.gz.X_tv_snp.vcf.gz.tbi
1780126826.0000000000 6229259 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/results/day/hg38/JEMILMN0P1-HG002-0p1x-1-D0-PF-ILMN-NOVASEQ/align/sent/dmd/snv/sentd/concordance/_giabHCv5q/fn_vcf_gz_stripped.vcf.gz.X_tv_snp.vcf.gz
1780126826.0000000000 3755156 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/results/day/hg38/JEMILMN0P1-HG002-0p1x-1-D0-PF-ILMN-NOVASEQ/align/sent/dmd/snv/sentd/concordance/_giabHCv5q/fn_vcf_gz_stripped.vcf.gz.X_ins_50.vcf.gz
1780126826.0000000000 3585618 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/results/day/hg38/JEMILMN0P1-HG002-0p1x-1-D0-PF-ILMN-NOVASEQ/align/sent/dmd/snv/sentd/concordance/_giabHCv5q/fn_vcf_gz_stripped.vcf.gz.X_del_50.vcf.gz
1780126826.0000000000 19885 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/results/day/hg38/JEMILMN0P1-HG002-0p1x-1-D0-PF-ILMN-NOVASEQ/align/sent/dmd/snv/sentd/concordance/_giabHCv5q/fn_vcf_gz_stripped.vcf.gz.X_indel_50.vcf.gz
## snakemake logs
1780126863.0000000000 29 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/.snakemake/log/2026-05-30T074100.668258.snakemake.log
1780126859.0000000000 864851 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/.snakemake/log/2026-05-30T065050.641034.snakemake.log
## failure markers
/fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/pipeline_workflow_final_failed.mmd:766:  r382["sentdhupmr_merge_beds<br/>samples: HG002<br/>complete: 0 running: 0 pending: 0 failed: 1<br/>cmd: set -euo pipefail<br/>versions: pipefail unavailable<br/>avg=n/a min=n/a max=n/a"]:::rule
/fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/pipeline_workflow_final_failed.mmd:768:  r383["sentdhupmr_stage1<br/>samples: HG002<br/>complete: 0 running: 0 pending: 0 failed: 1<br/>cmd: set -euo pipefail<br/>versions: pipefail unavailable<br/>avg=n/a min=n/a max=n/a"]:::rule
/fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/pipeline_workflow_final_failed.mmd:770:  r384["sentdhupmr_stage2<br/>samples: HG002<br/>complete: 0 running: 0 pending: 0 failed: 1<br/>cmd: set -euo pipefail<br/>versions: pipefail unavailable<br/>avg=n/a min=n/a max=n/a"]:::rule
/fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/pipeline_workflow_final_failed.mmd:772:  r385["sentdhupmr_stage3<br/>samples: HG002<br/>complete: 0 running: 0 pending: 0 failed: 1<br/>cmd: set -euo pipefail<br/>versions: pipefail unavailable<br/>avg=n/a min=n/a max=n/a"]:::rule
/fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/pipeline_workflow_final_failed.mmd:774:  r386["sentdhupmr_pass2<br/>samples: HG002<br/>complete: 0 running: 0 pending: 0 failed: 1<br/>cmd: set -euo pipefail<br/>versions: pipefail unavailable<br/>avg=n/a min=n/a max=n/a"]:::rule
/fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/pipeline_workflow_final_failed.mmd:776:  r387["sentdhupmr_subset<br/>samples: HG002<br/>complete: 0 running: 0 pending: 0 failed: 1<br/>cmd: set -euo pipefail<br/>versions: pipefail unavailable<br/>avg=n/a min=n/a max=n/a"]:::rule
/fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/pipeline_workflow_final_failed.mmd:778:  r388["sentdhupmr_concat_pass<br/>samples: HG002<br/>complete: 0 running: 0 pending: 0 failed: 1<br/>cmd: set -euo pipefail<br/>versions: pipefail unavailable<br/>avg=n/a min=n/a max=n/a"]:::rule
/fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/pipeline_workflow_final_failed.mmd:780:  r389["sentdhupmr_anno<br/>samples: HG002<br/>complete: 0 running: 0 pending: 0 failed: 1<br/>cmd: set -euo pipefail<br/>versions: pipefail unavailable<br/>avg=n/a min=n/a max=n/a"]:::rule
/fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/pipeline_workflow_final_failed.mmd:782:  r390["sentdhupmr_transfer<br/>samples: HG002<br/>complete: 0 running: 0 pending: 0 failed: 1<br/>cmd: set -euo pipefail<br/>versions: pipefail unavailable<br/>avg=n/a min=n/a max=n/a"]:::rule
/fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/pipeline_workflow_final_failed.mmd:784:  r391["sentdhupmr_transfer_merge<br/>samples: HG002<br/>complete: 0 running: 0 pending: 0 failed: 1<br/>cmd: set -euo pipefail<br/>versions: pipefail unavailable<br/>avg=n/a min=n/a max=n/a"]:::rule
/fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/pipeline_workflow_final_failed.mmd:786:  r392["sentdhupmr_model_apply<br/>samples: HG002<br/>complete: 0 running: 0 pending: 0 failed: 1<br/>cmd: set -euo pipefail<br/>versions: pipefail unavailable<br/>avg=n/a min=n/a max=n/a"]:::rule
/fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/pipeline_workflow_final_failed.mmd:788:  r393["sentdhupmr_final_norm<br/>samples: HG002<br/>complete: 0 running: 0 pending: 0 failed: 1<br/>cmd: set -euo pipefail<br/>versions: pipefail unavailable<br/>avg=n/a min=n/a max=n/a"]:::rule
/fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/pipeline_workflow_final_failed.mmd:790:  r394["sentdhupmr_concat_fofn<br/>samples: HG002<br/>complete: 0 running: 0 pending: 0 failed: 1<br/>cmd: for i in {input.chunk_tbi}; do<br/>versions: do unavailable, i unavailable, in unavailable<br/>avg=n/a min=n/a max=n/a"]:::rule
/fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/pipeline_workflow_final_failed.mmd:792:  r395["sentdhupmr_concat_index_chunks<br/>samples: HG002<br/>complete: 0 running: 0 pending: 0 failed: 1<br/>cmd: touch {log};<br/>versions: none<br/>avg=n/a min=n/a max=n/a"]:::rule
/fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/pipeline_workflow_final_failed.mmd:794:  r396["clear_combined_sentdhupmr_vcf<br/>samples: HG002<br/>complete: 0 running: 0 pending: 0 failed: 1<br/>cmd: rm {input}* 1> /dev/null 2> /dev/null ) || echo 'file not found for deletion: {input}';<br/>versions: file unavailable, found unavailable, not unavailable<br/>avg=n/a min=n/a max=n/a"]:::rule
/fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/pipeline_workflow_final_failed.mmd:796:  r397["produce_sentdhupmr_vcf<br/>samples: HG002<br/>complete: 0 running: 0 pending: 0 failed: 1<br/>cmd: ( touch {output} ;<br/>versions: none<br/>avg=n/a min=n/a max=n/a"]:::rule
/fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/pipeline_workflow_final_failed.mmd:798:  r398["sentdhupmr_call_svs<br/>samples: HG002<br/>complete: 0 running: 0 pending: 0 failed: 1<br/>cmd: set -euo pipefail<br/>versions: pipefail unavailable<br/>avg=n/a min=n/a max=n/a"]:::rule
/fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/pipeline_workflow_final_failed.mmd:800:  r399["produce_sentdhupmr_sv<br/>samples: HG002<br/>complete: 0 running: 0 pending: 0 failed: 1<br/>cmd: ( touch {output} ;<br/>versions: none<br/>avg=n/a min=n/a max=n/a"]:::rule
/fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/pipeline_workflow_final_failed.mmd:802:  r400["prep_sentdhupmr_chunkdirs<br/>samples: HG002<br/>complete: 0 running: 0 pending: 0 failed: 1<br/>cmd: ( echo {output} ;<br/>versions: none<br/>avg=n/a min=n/a max=n/a"]:::rule
/fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/pipeline_workflow_final_failed.mmd:804:  r401["sent_snv_ont<br/>samples: HG002<br/>complete: 0 running: 0 pending: 0 failed: 1<br/>cmd: export PATH=$PATH:/fsx/references/runtime_assets/cached_envs/sentieon-genomics-202503.02/bin/<br/>versions: none<br/>avg=n/a min=n/a max=n/a"]:::rule
/fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/pipeline_workflow_final_failed.mmd:806:  r402["clear_combined_sentdont_vcf<br/>samples: HG002<br/>complete: 0 running: 0 pending: 0 failed: 1<br/>cmd: rm {input}* 1> /dev/null 2> /dev/null || echo 'file not found for deletion: {input}';<br/>versions: file unavailable, found unavailable, not unavailable<br/>avg=n/a min=n/a max=n/a"]:::rule
/fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/pipeline_workflow_final_failed.mmd:808:  r403["produce_sentdont_vcf<br/>samples: HG002<br/>complete: 0 running: 0 pending: 0 failed: 1<br/>cmd: ( touch {output} ;<br/>versions: none<br/>avg=n/a min=n/a max=n/a"]:::rule
/fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/pipeline_workflow_final_failed.mmd:810:  r404["sent_snv_pacbio<br/>samples: HG002<br/>complete: 0 running: 0 pending: 0 failed: 1<br/>cmd: export PATH=$PATH:/fsx/references/runtime_assets/cached_envs/sentieon-genomics-202503.02/bin/<br/>versions: none<br/>avg=n/a min=n/a max=n/a"]:::rule
/fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/pipeline_workflow_final_failed.mmd:812:  r405["clear_combined_sentdpb_vcf<br/>samples: HG002<br/>complete: 0 running: 0 pending: 0 failed: 1<br/>cmd: rm {input}* 1> /dev/null 2> /dev/null || echo 'file not found for deletion: {input}';<br/>versions: file unavailable, found unavailable, not unavailable<br/>avg=n/a min=n/a max=n/a"]:::rule
/fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/pipeline_workflow_final_failed.mmd:814:  r406["produce_sentdpb_vcf<br/>samples: HG002<br/>complete: 0 running: 0 pending: 0 failed: 1<br/>cmd: ( touch {output} ;<br/>versions: none<br/>avg=n/a min=n/a max=n/a"]:::rule
/fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/pipeline_workflow_final_failed.mmd:816:  r407["sent_snv_ug<br/>samples: HG002<br/>complete: 0 running: 0 pending: 0 failed: 1<br/>cmd: timestamp=$(date +%Y%m%d%H%M%S)_$$;<br/>versions: date unavailable<br/>avg=n/a min=n/a max=n/a"]:::rule
/fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/pipeline_workflow_final_failed.mmd:818:  r408["sentdug_sort_index_chunk_vcf<br/>samples: HG002<br/>complete: 0 running: 0 pending: 0 failed: 1<br/>cmd: cp {input.vcf} {output.vcfsort} >> {log} 2>&1;<br/>versions: none<br/>avg=n/a min=n/a max=n/a"]:::rule
/fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/pipeline_workflow_final_failed.mmd:820:  r409["sentdug_concat_fofn<br/>samples: HG002<br/>complete: 0 running: 0 pending: 0 failed: 1<br/>cmd: for i in {input.chunk_tbi}; do<br/>versions: do unavailable, i unavailable, in unavailable<br/>avg=n/a min=n/a max=n/a"]:::rule
/fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/pipeline_workflow_final_failed.mmd:822:  r410["sentdug_concat_index_chunks<br/>samples: HG002<br/>complete: 0 running: 0 pending: 0 failed: 1<br/>cmd: touch {log};<br/>versions: none<br/>avg=n/a min=n/a max=n/a"]:::rule
/fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/pipeline_workflow_final_failed.mmd:824:  r411["clear_combined_sentdug_vcf<br/>samples: HG002<br/>complete: 0 running: 0 pending: 0 failed: 1<br/>cmd: rm {input}* 1> /dev/null 2> /dev/null ) || echo 'file not found for deletion: {input}';<br/>versions: file unavailable, found unavailable, not unavailable<br/>avg=n/a min=n/a max=n/a"]:::rule
/fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/pipeline_workflow_final_failed.mmd:826:  r412["produce_sentdug_vcf<br/>samples: HG002<br/>complete: 0 running: 0 pending: 0 failed: 1<br/>cmd: ( touch {output} ;<br/>versions: none<br/>avg=n/a min=n/a max=n/a"]:::rule
/fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/pipeline_workflow_final_failed.mmd:828:  r413["prep_sentdug_chunkdirs<br/>samples: HG002<br/>complete: 0 running: 0 pending: 0 failed: 1<br/>cmd: ( echo {output} ;<br/>versions: none<br/>avg=n/a min=n/a max=n/a"]:::rule
/fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/pipeline_workflow_final_failed.mmd:830:  r414["sentieon_bwa_sort<br/>samples: HG002<br/>complete: 0 running: 0 pending: 0 failed: 1<br/>cmd: if [ -z '$SENTIEON_LICENSE' ]; then<br/>versions: none<br/>avg=n/a min=n/a max=n/a"]:::rule
/fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/pipeline_workflow_final_failed.mmd:832:  r415["sentieon_cgt7p_bwa_sort<br/>samples: HG002<br/>complete: 0 running: 0 pending: 0 failed: 1<br/>cmd: if [ -z '$SENTIEON_LICENSE' ]; then<br/>versions: none<br/>avg=n/a min=n/a max=n/a"]:::rule
/fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/pipeline_workflow_final_failed.mmd:834:  r416["produce_sentieon_bwa_sort_bam<br/>samples: HG002<br/>complete: 0 running: 0 pending: 0 failed: 1<br/>cmd: no shell command<br/>versions: none<br/>avg=n/a min=n/a max=n/a"]:::rule
/fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/pipeline_workflow_final_failed.mmd:836:  r417["produce_sentieon_cgt7p_bwa_sort_bam<br/>samples: HG002<br/>complete: 0 running: 0 pending: 0 failed: 1<br/>cmd: no shell command<br/>versions: none<br/>avg=n/a min=n/a max=n/a"]:::rule
/fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/pipeline_workflow_final_failed.mmd:838:  r418["sent_dedup<br/>samples: HG002<br/>complete: 0 running: 0 pending: 0 failed: 1<br/>cmd: set -euo pipefail;<br/>versions: none<br/>avg=n/a min=n/a max=n/a"]:::rule
/fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/pipeline_workflow_final_failed.mmd:840:  r419["sentieon_gatk_bsqr<br/>samples: HG002<br/>complete: 0 running: 0 pending: 0 failed: 1<br/>cmd: if [ -z '$SENTIEON_LICENSE' ]; then<br/>versions: none<br/>avg=n/a min=n/a max=n/a"]:::rule
/fsx/analysis_results/ubuntu/ccv20260529r26_illumina_hg002_kitchensink_multiqc/daylily-omics-analysis/pipeline_workflow_final_failed.mmd:842:  r420["prep_gatk_chunkdirs<br/>samples: HG002<br/--output truncated--