DAY-EC activated.
DAY-EC activated.
=== timestamp ===
2026-05-30T09:40:27Z
=== filesystem ===
Filesystem               Size  Used Avail Use% Mounted on
10.0.1.96@tcp:/d4tzvb4v  8.8T  7.3T  1.5T  84% /fsx
=== scratch sizes ===
4.0T	.bclconvert_scratch
4.0T	.bclconvert_scratch/2660.35306
3.2T	.bclconvert_scratch/2660.35306/run
837G	.bclconvert_scratch/2660.35306/fastqs
=== result sizes ===
316K	results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert
65K	results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/fastqs
=== newest scratch fastqs ===
2026-05-30T09:40:45.0000000000 3739222016 .bclconvert_scratch/2660.35306/fastqs/HG002-a_S4_L002_R1_001.fastq.gz
2026-05-30T09:40:45.0000000000 3778019328 .bclconvert_scratch/2660.35306/fastqs/BUCCAL9-a_S33_L002_R1_001.fastq.gz
2026-05-30T09:40:46.0000000000 2656043008 .bclconvert_scratch/2660.35306/fastqs/HG007-b_S20_L002_R2_001.fastq.gz
2026-05-30T09:40:46.0000000000 2853175296 .bclconvert_scratch/2660.35306/fastqs/HG007-a_S19_L002_R2_001.fastq.gz
2026-05-30T09:40:46.0000000000 2960130048 .bclconvert_scratch/2660.35306/fastqs/HG006-b_S17_L002_R2_001.fastq.gz
2026-05-30T09:40:46.0000000000 3024093184 .bclconvert_scratch/2660.35306/fastqs/HG004-c_S12_L002_R1_001.fastq.gz
2026-05-30T09:40:46.0000000000 3091202048 .bclconvert_scratch/2660.35306/fastqs/HG002-c_S6_L002_R1_001.fastq.gz
2026-05-30T09:40:46.0000000000 3111124992 .bclconvert_scratch/2660.35306/fastqs/HG006-c_S18_L002_R2_001.fastq.gz
2026-05-30T09:40:46.0000000000 3121610752 .bclconvert_scratch/2660.35306/fastqs/HG007-c_S21_L002_R2_001.fastq.gz
2026-05-30T09:40:46.0000000000 3183476736 .bclconvert_scratch/2660.35306/fastqs/HG006-a_S16_L002_R2_001.fastq.gz
2026-05-30T09:40:46.0000000000 3199205376 .bclconvert_scratch/2660.35306/fastqs/HG003-a_S7_L002_R1_001.fastq.gz
2026-05-30T09:40:46.0000000000 3203399680 .bclconvert_scratch/2660.35306/fastqs/HG003-b_S8_L002_R1_001.fastq.gz
2026-05-30T09:40:46.0000000000 3235905536 .bclconvert_scratch/2660.35306/fastqs/NA07439-a_S36_L002_R2_001.fastq.gz
2026-05-30T09:40:46.0000000000 3274702848 .bclconvert_scratch/2660.35306/fastqs/HG004-b_S11_L002_R1_001.fastq.gz
2026-05-30T09:40:46.0000000000 3344957440 .bclconvert_scratch/2660.35306/fastqs/HG004-a_S10_L002_R1_001.fastq.gz
2026-05-30T09:40:46.0000000000 3356491776 .bclconvert_scratch/2660.35306/fastqs/HG003-c_S9_L002_R1_001.fastq.gz
2026-05-30T09:40:46.0000000000 3488612352 .bclconvert_scratch/2660.35306/fastqs/NA05212-a_S38_L002_R2_001.fastq.gz
2026-05-30T09:40:46.0000000000 3955228672 .bclconvert_scratch/2660.35306/fastqs/NA05115-a_S34_L002_R2_001.fastq.gz
2026-05-30T09:40:47.0000000000 20686307328 .bclconvert_scratch/2660.35306/fastqs/Undetermined_S0_L002_R2_001.fastq.gz
2026-05-30T09:40:47.0000000000 2575302656 .bclconvert_scratch/2660.35306/fastqs/HG007-b_S20_L002_R1_001.fastq.gz
2026-05-30T09:40:47.0000000000 2789212160 .bclconvert_scratch/2660.35306/fastqs/HG007-a_S19_L002_R1_001.fastq.gz
2026-05-30T09:40:47.0000000000 2802843648 .bclconvert_scratch/2660.35306/fastqs/HG005-b_S14_L002_R1_001.fastq.gz
2026-05-30T09:40:47.0000000000 2894069760 .bclconvert_scratch/2660.35306/fastqs/HG006-b_S17_L002_R1_001.fastq.gz
2026-05-30T09:40:47.0000000000 2905604096 .bclconvert_scratch/2660.35306/fastqs/HG005-c_S15_L002_R1_001.fastq.gz
2026-05-30T09:40:47.0000000000 2992635904 .bclconvert_scratch/2660.35306/fastqs/NA09216-a_S35_L002_R2_001.fastq.gz
2026-05-30T09:40:47.0000000000 3037724672 .bclconvert_scratch/2660.35306/fastqs/HG006-c_S18_L002_R1_001.fastq.gz
2026-05-30T09:40:47.0000000000 3058696192 .bclconvert_scratch/2660.35306/fastqs/HG007-c_S21_L002_R1_001.fastq.gz
2026-05-30T09:40:47.0000000000 3095396352 .bclconvert_scratch/2660.35306/fastqs/HG006-a_S16_L002_R1_001.fastq.gz
2026-05-30T09:40:47.0000000000 3288334336 .bclconvert_scratch/2660.35306/fastqs/NA15849-a_S39_L002_R2_001.fastq.gz
2026-05-30T09:40:47.0000000000 3295674368 .bclconvert_scratch/2660.35306/fastqs/NA20241-a_S37_L002_R2_001.fastq.gz
2026-05-30T09:40:47.0000000000 3341811712 .bclconvert_scratch/2660.35306/fastqs/HG005-a_S13_L002_R1_001.fastq.gz
2026-05-30T09:40:47.0000000000 3652190208 .bclconvert_scratch/2660.35306/fastqs/NA20208-a_S40_L002_R2_001.fastq.gz
2026-05-30T09:40:48.0000000000 21709717504 .bclconvert_scratch/2660.35306/fastqs/Undetermined_S0_L002_R1_001.fastq.gz
2026-05-30T09:40:48.0000000000 2967470080 .bclconvert_scratch/2660.35306/fastqs/NA09216-a_S35_L002_R1_001.fastq.gz
2026-05-30T09:40:48.0000000000 3146776576 .bclconvert_scratch/2660.35306/fastqs/NA07439-a_S36_L002_R1_001.fastq.gz
2026-05-30T09:40:48.0000000000 3242196992 .bclconvert_scratch/2660.35306/fastqs/NA20241-a_S37_L002_R1_001.fastq.gz
2026-05-30T09:40:48.0000000000 3250585600 .bclconvert_scratch/2660.35306/fastqs/NA15849-a_S39_L002_R1_001.fastq.gz
2026-05-30T09:40:48.0000000000 3412066304 .bclconvert_scratch/2660.35306/fastqs/NA05212-a_S38_L002_R1_001.fastq.gz
2026-05-30T09:40:48.0000000000 3600809984 .bclconvert_scratch/2660.35306/fastqs/NA20208-a_S40_L002_R1_001.fastq.gz
2026-05-30T09:40:48.0000000000 3896508416 .bclconvert_scratch/2660.35306/fastqs/NA05115-a_S34_L002_R1_001.fastq.gz
=== bcl log tail ===
run_bclconvert started: 2026-05-30T06:33:47+00:00
host: i192mem-dy-all-1
threads: 192
resources_mem_mb: 180000
TMPDIR: /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch
staging_mode: mounted_dev_shm
scratch_root: /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch
bcl_input_directory: /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/
source_s3_uri: s3://lsmc-ssf-sequencing-data/basecalls/lsmc/ssf-hq/LH01106/2026/20260514_LH01106_0009_B23TVLGLT4/
output_directory: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/fastqs
192
Filesystem               Size  Used Avail Use% Mounted on
10.0.1.96@tcp:/d4tzvb4v  8.8T  195G  8.6T   3% /fsx
10.0.1.96@tcp:/d4tzvb4v  8.8T  195G  8.6T   3% /fsx
/usr/bin/singularity
INFO:    Using cached SIF image
bcl-convert Version 00.000.000.4.0.3
Copyright (c) 2014-2018 Illumina, Inc.
scratch_dir: /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306
scratch_input_basis: mounted_metadata_plus_lane_root
scratch_root_file_bytes: 4536017
scratch_intensities_file_bytes: 52032652
scratch_lane_root_disk_bytes: 92860928
scratch_input_disk_bytes: 149429597
scratch_input_apparent_bytes: 149429597
scratch_required_bytes: 1671460212
scratch_available_bytes: 9361524129792
Staging mounted BCL run directory to scratch: 2026-05-30T06:33:54+00:00
mounted_stage_lanes: L001 L002 L003 L004 L005 L006 L007 L008
mounted_stage_jobs: 64
mounted_stage_cycle_dirs: 2576
mounted_stage_regular_files: 11424
Copying mounted BCL files with sharded cp: 2026-05-30T06:34:06+00:00
Copying root-level BCL metadata
Skipping InterOp during BCLConvert scratch staging; run-QC rules own InterOp parsing
Mounted scratch staging complete: 2026-05-30T08:09:43+00:00
3.0T	/fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run
Filesystem               Size  Used Avail Use% Mounted on
10.0.1.96@tcp:/d4tzvb4v  8.8T  6.5T  2.3T  74% /fsx
bcl_num_parallel_tiles: 8
bcl_num_conversion_threads: 8
bcl_num_compression_threads: 12
bcl_num_decompression_threads: 4
bcl-convert command: singularity exec docker://nfcore/bclconvert:4.0.3 bcl-convert --bcl-input-directory /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run --output-directory /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/fastqs --sample-sheet results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/normalized.SampleSheet.csv --strict-mode false --first-tile-only false --bcl-sampleproject-subdirectories false --fastq-gzip-compression-level 1 --bcl-num-parallel-tiles 8 --bcl-num-conversion-threads 8 --bcl-num-compression-threads 12 --bcl-num-decompression-threads 4 --shared-thread-odirect-output false -f
INFO:    Using cached SIF image
