Metadata-Version: 2.4
Name: selenoprofiles4
Version: 4.5.7
Summary: Gene finding pipeline for selenoprotein and selenocysteine machinery
Home-page: https://github.com/marco-mariotti/selenoprofiles4
Author: Max Ticó, Marco Mariotti
Author-email: max.tico@ub.edu, marco.mariotti@ub.edu
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Requires-Python: <3.13,>=3.12
Description-Content-Type: text/markdown
License-File: LICENSE
Requires-Dist: setuptools
Requires-Dist: biopython>=1.46
Requires-Dist: networkx
Requires-Dist: requests>=2.27
Requires-Dist: obonet>=0.2.3
Requires-Dist: networkx>=3.0
Requires-Dist: easyterm>=1.0.0
Provides-Extra: addons
Requires-Dist: pyranges1[all]==1.1.4; extra == "addons"
Requires-Dist: pyfaidx; extra == "addons"
Requires-Dist: ncbi-db; extra == "addons"
Requires-Dist: pyaln; extra == "addons"
Requires-Dist: ete3; extra == "addons"
Requires-Dist: matplotlib; extra == "addons"
Dynamic: license-file

# selenoprofiles4
Profile-based gene finding pipeline specialized in selenoprotein and selenocysteine machinery.

For installation instructions and documentation, visit https://selenoprofiles4.readthedocs.io/.


## Bug report
Please report any bugs at the [github issues page](https://github.com/marco-mariotti/selenoprofiles4/issues).

## Citation
Mariotti M, Guigó R (2010)
Selenoprofiles: profile-based scanning of eukaryotic genome sequences for selenoprotein genes.
*Bioinformatics. 2010 Nov 1;26(21):2656-63*.

Santesmasses D, Mariotti M, Guigó R (2018)
Selenoprofiles: A Computational Pipeline for Annotation of Selenoproteins.
*Methods Mol Biol. 2018;1661:17-28*.
