LICENSE
README.md
pyproject.toml
pyaptamer/__init__.py
pyaptamer.egg-info/PKG-INFO
pyaptamer.egg-info/SOURCES.txt
pyaptamer.egg-info/dependency_links.txt
pyaptamer.egg-info/requires.txt
pyaptamer.egg-info/top_level.txt
pyaptamer/aptanet/__init__.py
pyaptamer/aptanet/_aptanet_nn.py
pyaptamer/aptanet/_feature_classifier.py
pyaptamer/aptanet/_pipeline.py
pyaptamer/aptatrans/__init__.py
pyaptamer/aptatrans/_model.py
pyaptamer/aptatrans/_model_lightning.py
pyaptamer/aptatrans/_pipeline.py
pyaptamer/aptatrans/layers/__init__.py
pyaptamer/aptatrans/layers/_convolutional.py
pyaptamer/aptatrans/layers/_encoder.py
pyaptamer/aptatrans/layers/_interaction_map.py
pyaptamer/benchmarking/__init__.py
pyaptamer/benchmarking/_base.py
pyaptamer/data/__init__.py
pyaptamer/data/loader.py
pyaptamer/datasets/__init__.py
pyaptamer/datasets/_loaders/_1brq.py
pyaptamer/datasets/_loaders/_1gnh.py
pyaptamer/datasets/_loaders/_5nu7.py
pyaptamer/datasets/_loaders/__init__.py
pyaptamer/datasets/_loaders/_aptacom_loader.py
pyaptamer/datasets/_loaders/_csv_loader.py
pyaptamer/datasets/_loaders/_hf_to_dataset_loader.py
pyaptamer/datasets/_loaders/_li2014.py
pyaptamer/datasets/_loaders/_online_databank.py
pyaptamer/datasets/_loaders/_pfoa.py
pyaptamer/datasets/data/1brq.pdb
pyaptamer/datasets/data/1gnh.pdb
pyaptamer/datasets/data/1gnh_no_seqres.pdb
pyaptamer/datasets/data/5nu7.pdb
pyaptamer/datasets/data/AptaCom03.csv
pyaptamer/datasets/data/__init__.py
pyaptamer/datasets/data/dummy_data.csv
pyaptamer/datasets/data/pfoa.pdb
pyaptamer/datasets/data/protein_word_freq.csv
pyaptamer/datasets/data/test_li2014.csv
pyaptamer/datasets/data/train_li2014.csv
pyaptamer/datasets/dataclasses/__init__.py
pyaptamer/datasets/dataclasses/_api.py
pyaptamer/datasets/dataclasses/_masked.py
pyaptamer/experiments/__init__.py
pyaptamer/experiments/_aptamer.py
pyaptamer/experiments/_aptamer_aptanet.py
pyaptamer/experiments/_aptamer_aptatrans.py
pyaptamer/mcts/__init__.py
pyaptamer/mcts/_algorithm.py
pyaptamer/pseaac/__init__.py
pyaptamer/pseaac/_props.py
pyaptamer/pseaac/_pseaac_aptanet.py
pyaptamer/pseaac/_pseaac_general.py
pyaptamer/trafos/__init__.py
pyaptamer/trafos/base/__init__.py
pyaptamer/trafos/base/_base.py
pyaptamer/trafos/encode/__init__.py
pyaptamer/trafos/encode/_greedy.py
pyaptamer/utils/__init__.py
pyaptamer/utils/_aa_str_to_letter.py
pyaptamer/utils/_aptanet_utils.py
pyaptamer/utils/_aptatrans_utils.py
pyaptamer/utils/_augment.py
pyaptamer/utils/_base.py
pyaptamer/utils/_pdb_to_aaseq.py
pyaptamer/utils/_pdb_to_seq_uniprot.py
pyaptamer/utils/_pdb_to_struct.py
pyaptamer/utils/_pseaac_utils.py
pyaptamer/utils/_rna.py
pyaptamer/utils/_struct_to_aaseq.py