numpy>=1.24
pandas>=2
pyarrow>=15
pydantic>=2
typer>=0.12
mcp<3,>=2
ms2pip>=4.1
pyopenms>=3.3
pyteomics>=4.7
spectrum-utils>=0.4
plotly>=5
matplotlib>=3.8
seaborn>=0.13
openpyxl>=3.1.5
alphatims>=1.1.1

[dev]
pytest>=8
