Metadata-Version: 2.4
Name: genomehouse
Version: 1.2.0
Summary: Modular bioinformatics toolkit for sequence analysis, parsing, ML, and visualization.
Home-page: https://github.com/GenomeHouse/GenomeHouse-1.1
Author: Mubashir Ali
Author-email: GenomeHouse <mubashirali1837@gmail.com>
License: MIT License
        
        Copyright (c) 2025 GenomeHouse Team
        
        Permission is hereby granted, free of charge, to any person obtaining a copy
        of this software and associated documentation files (the "Software"), to deal
        in the Software without restriction, including without limitation the rights
        to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
        copies of the Software, and to permit persons to whom the Software is
        furnished to do so, subject to the following conditions:
        
        The above copyright notice and this permission notice shall be included in all
        copies or substantial portions of the Software.
        
        THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
        IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
        FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
        AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
        LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
        OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
        SOFTWARE.
        
Project-URL: Homepage, https://github.com/GenomeHouse/GenomeHouse-1.1
Project-URL: Documentation, https://github.com/GenomeHouse/GenomeHouse-1.1/tree/main/docs
Requires-Python: >=3.8
Description-Content-Type: text/markdown
License-File: LICENSE
Requires-Dist: numpy
Requires-Dist: pandas
Requires-Dist: scikit-learn
Requires-Dist: matplotlib
Requires-Dist: seaborn
Requires-Dist: joblib
Dynamic: author
Dynamic: home-page
Dynamic: license-file
Dynamic: requires-python

# GenomeHouse

GenomeHouse is a modular, user-friendly Python toolkit for bioinformatics and genomics research. It provides tools for sequence analysis, genomic data parsing, machine learning, visualization, and more—all under one roof.

## Features
- Sequence analysis: reverse complement, motif search, GC content, translation
- Genomic data parsing: FASTA, FASTQ, VCF, GFF/GTF
- Machine learning pipelines for biological data
- Publication-quality data visualization
- Statistical analysis tools
- Extensible and user-friendly API

## Installation
```bash
pip install genomehouse
```

## Quick Start
```python
from genomehouse import sequence_tools, genomic_parsers
seq = "ATGCGTAC"
print(sequence_tools.gc_content(seq))
for header, seq in genomic_parsers.parse_fasta("example.fasta"):
	print(header, seq)
```

## CLI Usage
```bash
genomehouse-cli parse-fasta data/sample.fasta
genomehouse-cli gc-content ATGCGTAC
```

## Documentation
See the `docs/` folder for full API documentation and usage examples.

## License
[License](LICENSE)

## Source Code
[GitHub Repository](https://github.com/GenomeHouse/GenomeHouse-1.1)
