# fibsem imports inside functions, per module: tests/test_local_imports.py
fibsem/ai/agent/calls.py 1
fibsem/ai/agent/catalog/app.py 1
fibsem/ai/agent/catalog/describe.py 2
fibsem/ai/agent/catalog/imaging.py 2
fibsem/ai/agent/catalog/items.py 2
fibsem/ai/agent/catalog/microscope.py 1
fibsem/ai/agent/catalog/spec.py 2
fibsem/ai/agent/code_mode.py 1
fibsem/ai/agent/drawing.py 3
fibsem/ai/agent/harness.py 3
fibsem/ai/agent/library.py 4
fibsem/ai/agent/manager.py 1
fibsem/ai/agent/mcp/sidecar.py 4
fibsem/ai/agent/pictures.py 17
fibsem/ai/agent/session.py 8
fibsem/ai/agent/sources.py 1
fibsem/ai/agent/watch.py 1
fibsem/alignment/coincidence.py 10
fibsem/alignment/methods.py 1
fibsem/alignment/plotting.py 5
fibsem/applications/autolamella/config_edits.py 6
fibsem/applications/autolamella/overview_figure.py 5
fibsem/applications/autolamella/server/context.py 1
fibsem/applications/autolamella/server/replay.py 3
# Deliberate: the experiment decodes task configs through the task registry, whose tasks import it.
fibsem/applications/autolamella/structures.py 7
fibsem/applications/autolamella/task_outputs.py 6
fibsem/applications/autolamella/tools/grid_report_html.py 1
fibsem/applications/autolamella/tools/replay.py 1
fibsem/applications/autolamella/ui/coincidence/menu.py 7
fibsem/applications/autolamella/ui/grids/protocol.py 2
fibsem/applications/autolamella/ui/header.py 1
fibsem/applications/autolamella/ui/lamella/history.py 5
fibsem/applications/autolamella/ui/launch.py 2
fibsem/applications/autolamella/ui/menu_bar.py 12
fibsem/applications/autolamella/ui/protocol/lamella_editor.py 3
fibsem/applications/autolamella/ui/window.py 5
fibsem/applications/autolamella/workflows/tasks/__init__.py 1
fibsem/applications/autolamella/workflows/tasks/fiducial.py 1
fibsem/applications/autolamella/workflows/tasks/manager.py 1
fibsem/applications/autolamella/workflows/tasks/select_position.py 4
fibsem/applications/autolamella/workflows/tasks/setup_coincidence_milling.py 3
fibsem/applications/volume/server.py 1
fibsem/autofunctions/acb.py 4
fibsem/autofunctions/autofocus.py 8
fibsem/autofunctions/brightness_contrast.py 3
fibsem/autofunctions/charge_neutralisation.py 1
fibsem/autofunctions/plotting.py 5
fibsem/cli.py 14
fibsem/client/pairing.py 1
fibsem/client/remote_microscope.py 4
fibsem/codec/upgrades/fluorescence.py 1
fibsem/codec/upgrades/pre_task_protocol.py 2
fibsem/config.py 2
fibsem/correlation/fit.py 2
fibsem/correlation/geometry.py 1
fibsem/correlation/history.py 1
fibsem/correlation/point_fit.py 1
fibsem/correlation/solver.py 1
fibsem/correlation/structures.py 2
fibsem/correlation/verdict.py 1
fibsem/detection/decided.py 1
fibsem/detection/detection.py 2
fibsem/devices/beam.py 1
fibsem/devices/core.py 1
fibsem/devices/entries.py 4
fibsem/drivers/autoscript/connection.py 2
fibsem/drivers/autoscript/devices.py 17
fibsem/drivers/autoscript/images.py 3
fibsem/drivers/autoscript/manipulator_calibration.py 3
fibsem/drivers/autoscript/microscope.py 10
fibsem/drivers/demo/devices.py 7
fibsem/drivers/demo/services.py 1
fibsem/drivers/demo/sim_scene.py 2
fibsem/drivers/demo/simulator.py 5
fibsem/drivers/odemis/devices.py 3
fibsem/drivers/odemis/microscope.py 2
fibsem/drivers/remote/devices.py 2
fibsem/fm/acquisition.py 1
fibsem/fm/calibration/__init__.py 1
fibsem/fm/interpolation.py 1
fibsem/fm/microscope.py 5
fibsem/fm/preview.py 3
fibsem/fm/reader.py 2
fibsem/fm/remote.py 1
fibsem/fm/structures.py 8
fibsem/gateway/agent.py 2
fibsem/gateway/gateway.py 4
fibsem/gateway/launch.py 1
fibsem/gateway/main.py 8
fibsem/geometry/orientations.py 1
fibsem/geometry/projection.py 2
fibsem/geometry/saved_images.py 10
fibsem/guided_setup.py 6
fibsem/image_format.py 2
fibsem/imaging/analysis.py 2
fibsem/imaging/cells.py 6
fibsem/imaging/export.py 1
fibsem/imaging/marks.py 1
fibsem/imaging/thickness.py 4
fibsem/microscope.py 14
# Deliberate: a stage decodes and defaults its strategy through the strategy registry, whose strategies import it.
fibsem/milling/base.py 6
fibsem/milling/core.py 2
# Deliberate: a monitor config decodes through the monitor registry, whose monitors import it.
fibsem/milling/monitor_config.py 3
fibsem/milling/patterning/base.py 3
fibsem/milling/patterning/patterns/circle.py 1
fibsem/milling/patterning/patterns/line.py 1
fibsem/milling/patterning/patterns/rectangle.py 1
fibsem/milling/patterning/patterns/ruler.py 1
fibsem/milling/patterning/patterns/trench.py 1
fibsem/milling/patterning/picture.py 2
fibsem/milling/patterning/utils.py 3
fibsem/milling/strategy/coincidence.py 1
fibsem/plugins/report.py 1
fibsem/schema.py 2
fibsem/segmentation/model.py 1
fibsem/segmentation/onnx_model.py 1
fibsem/segmentation/utils.py 1
fibsem/server/devices.py 7
fibsem/server/discovery.py 2
fibsem/server/exports.py 8
fibsem/server/files.py 13
fibsem/server/headless.py 1
fibsem/server/hosting.py 13
fibsem/server/image_payloads.py 10
fibsem/server/images.py 5
fibsem/server/planes.py 5
fibsem/server/server.py 2
fibsem/services/alignment.py 7
fibsem/services/analysis.py 1
fibsem/services/correlation.py 22
fibsem/services/imaging.py 14
fibsem/services/milling.py 12
fibsem/services/spot_burn.py 1
fibsem/services/stage_movement.py 5
fibsem/session_state.py 1
fibsem/structures/image.py 1
fibsem/structures/params.py 2
fibsem/structures/settings.py 7
fibsem/structures/system.py 5
fibsem/tools/desktop_launch.py 3
fibsem/tools/hardware_check/__init__.py 1
fibsem/ui/FibsemImageSettingsWidget.py 1
fibsem/ui/FibsemMovementWidget.py 1
fibsem/ui/FibsemSystemSetupWidget.py 1
fibsem/ui/agent/activity.py 1
fibsem/ui/agent/chip_host.py 5
fibsem/ui/app_window.py 1
fibsem/ui/correlation/widgets/correlation_tab_widget.py 11
fibsem/ui/correlation/widgets/fit_confirmation_dialog.py 1
fibsem/ui/fm/widgets/fm_image_viewer_widget.py 1
fibsem/ui/fm/widgets/fm_overview_widget.py 3
fibsem/ui/fm/widgets/fm_sparse_selection_dialog.py 2
fibsem/ui/fm/widgets/objective_control_widget.py 1
fibsem/ui/qt/threading.py 1
fibsem/ui/utils.py 2
fibsem/ui/widgets/about_dialog.py 5
fibsem/ui/widgets/connection_dialog.py 1
fibsem/ui/widgets/custom_widgets.py 1
fibsem/ui/widgets/fibsem_overview_settings_widget.py 1
fibsem/ui/widgets/guided_setup_dialog.py 2
fibsem/ui/widgets/holder_calibration_dialog.py 1
fibsem/ui/widgets/image_fit_dialog.py 2
fibsem/ui/widgets/image_viewer_dialog.py 1
fibsem/ui/widgets/microscope_configuration_window.py 6
fibsem/ui/widgets/overview_widget.py 12
fibsem/ui/widgets/sample_holder_widget.py 1
fibsem/ui/widgets/script_menu.py 1
fibsem/ui/widgets/script_runner.py 1
fibsem/ui/widgets/workflow/timeline.py 5
fibsem/update_check.py 2
fibsem/util/wording.py 4
fibsem/utils.py 7
fibsem/versioning.py 1
fibsem/workflows/config_patch.py 1
fibsem/workflows/estimate.py 3
fibsem/workflows/event_recording.py 2
fibsem/workflows/events.py 2
fibsem/workflows/evidence.py 10
fibsem/workflows/experiment.py 3
fibsem/workflows/grid/manager.py 1
fibsem/workflows/outputs.py 2
fibsem/workflows/proposals.py 6
fibsem/workflows/reference_images.py 1
fibsem/workflows/runner.py 1
fibsem/workflows/session.py 5
fibsem/workflows/site_task.py 1
fibsem/workflows/task.py 1
