DAY-EC activated.
DAY-EC activated.
host:
i192mem-dy-all-1
Sat May 30 07:14:07 UTC 2026

job_processes:
    PID    PPID STAT     ELAPSED %CPU %MEM COMMAND
  34407   34406 Sl         40:25  0.8  0.0 python
  35306   34407 S          40:19  0.0  0.0 bash
  37926   35306 S          40:01  0.0  0.0 xargs
  38038   37926 S          40:01  0.0  0.0 bash
  65696   37926 S          13:16  0.0  0.0 bash
  65973   37926 S          12:49  0.0  0.0 bash
  66016   37926 S          12:39  0.0  0.0 bash
  66204   37926 S          12:09  0.0  0.0 bash
  66626   37926 S          11:08  0.0  0.0 bash
  66861   37926 S          10:42  0.0  0.0 bash
  66915   37926 S          10:28  0.0  0.0 bash
  66946   37926 S          10:18  0.0  0.0 bash
  67050   37926 S          10:06  0.0  0.0 bash
  67140   37926 S          09:56  0.0  0.0 bash
  67159   37926 S          09:53  0.0  0.0 bash
  67193   37926 S          09:51  0.0  0.0 bash
  67257   37926 S          09:43  0.0  0.0 bash
  67276   37926 S          09:41  0.0  0.0 bash
  67346   37926 S          09:34  0.0  0.0 bash
  67414   37926 S          09:27  0.0  0.0 bash
  67427   37926 S          09:26  0.0  0.0 bash
  67641   37926 S          09:01  0.0  0.0 bash
  67679   37926 S          08:54  0.0  0.0 bash
  67692   37926 S          08:53  0.0  0.0 bash
  67789   37926 S          08:35  0.0  0.0 bash
  67853   37926 S          08:27  0.0  0.0 bash
  67863   37926 S          08:26  0.0  0.0 bash
  67979   37926 S          08:15  0.0  0.0 bash
  68035   37926 S          08:10  0.0  0.0 bash
  68045   37926 S          08:09  0.0  0.0 bash
  68058   37926 S          08:07  0.0  0.0 bash
  68187   37926 S          07:55  0.0  0.0 bash
  68203   37926 S          07:53  0.0  0.0 bash
  68288   37926 S          07:37  0.0  0.0 bash
  68310   37926 S          07:35  0.0  0.0 bash
  68396   37926 S          07:14  0.0  0.0 bash
  68548   37926 S          07:00  0.0  0.0 bash
  68565   37926 S          06:56  0.0  0.0 bash
  68632   37926 S          06:48  0.0  0.0 bash
  68803   37926 S          06:22  0.0  0.0 bash
  68950   37926 S          06:06  0.0  0.0 bash
  69069   37926 S          05:54  0.0  0.0 bash
  69109   37926 S          05:44  0.0  0.0 bash
  69143   37926 S          05:39  0.0  0.0 bash
  69189   37926 S          05:33  0.0  0.0 bash
  69289   37926 S          05:27  0.0  0.0 bash
  69299   37926 S          05:27  0.0  0.0 bash
  69325   37926 S          05:25  0.0  0.0 bash
  69419   37926 S          05:05  0.0  0.0 bash
  69515   37926 S          04:44  0.0  0.0 bash
  69562   37926 S          04:33  0.0  0.0 bash
  69570   37926 S          04:32  0.0  0.0 bash
  69615   37926 S          04:25  0.0  0.0 bash
  69632   37926 S          04:23  0.0  0.0 bash
  69692   37926 S          04:18  0.0  0.0 bash
  69708   37926 S          04:17  0.0  0.0 bash
  69800   37926 S          04:06  0.0  0.0 bash
  69912   37926 S          03:49  0.0  0.0 bash
  69937   37926 S          03:39  0.0  0.0 bash
  70035   37926 S          03:25  0.0  0.0 bash
  70106   37926 S          03:19  0.0  0.0 bash
  70621   37926 S          01:57  0.0  0.0 bash
  70637   37926 S          01:51  0.0  0.0 bash
  70671   37926 S          01:46  0.0  0.0 bash
  70717   37926 S          01:35  0.0  0.0 bash
  70921   68548 I          01:13  0.9  0.0 cp
  70936   66204 I          01:12  1.0  0.0 cp
  70946   68045 I          01:11  1.1  0.0 cp
  70966   65696 I          01:08  1.0  0.0 cp
  71043   69515 I          01:00  1.7  0.0 cp
  71059   69692 I          00:57  0.8  0.0 cp
  71083   67193 I          00:54  1.6  0.0 cp
  71089   67692 I          00:54  1.2  0.0 cp
  71095   67050 I          00:53  1.2  0.0 cp
  71101   66861 I          00:53  1.7  0.0 cp
  71107   68950 I          00:52  1.3  0.0 cp
  71134   67641 D          00:46  0.3  0.0 cp
  71137   69562 I          00:46  1.4  0.0 cp
  71146   70621 I          00:45  1.4  0.0 cp
  71152   68632 I          00:44  1.3  0.0 cp
  71167   69109 D          00:42  0.4  0.0 cp
  71173   70035 I          00:42  1.5  0.0 cp
  71179   69800 I          00:42  1.4  0.0 cp
  71185   67789 I          00:41  0.1  0.0 cp
  71194   38038 I          00:40  1.7  0.0 cp
  71202   69189 I          00:40  1.4  0.0 cp
  71203   67427 I          00:40  1.5  0.0 cp
  71206   70671 I          00:40  1.5  0.0 cp
  71210   69570 I          00:39  1.3  0.0 cp
  71212   65973 D          00:39  0.4  0.0 cp
  71224   67679 R          00:39  1.4  0.0 cp
  71227   68288 I          00:39  1.4  0.0 cp
  71232   66626 I          00:39  1.6  0.0 cp
  71233   70717 I          00:39  1.5  0.0 cp
  71236   69069 I          00:39  1.6  0.0 cp
  71245   68187 R          00:38  1.6  0.0 cp
  71251   69299 I          00:33  1.6  0.0 cp
  71264   68058 I          00:26  1.9  0.0 cp
  71270   67140 I          00:25  1.8  0.0 cp
  71276   69912 R          00:25  1.9  0.0 cp
  71279   70637 D          00:25  0.3  0.0 cp
  71291   69325 D          00:23  0.4  0.0 cp
  71294   68310 I          00:22  1.8  0.0 cp
  71300   69419 R          00:22  1.7  0.0 cp
  71301   37926 S          00:21  0.0  0.0 bash
  71304   71301 I          00:21  1.8  0.0 cp
  71327   69937 I          00:17  2.0  0.0 cp
  71336   67414 I          00:15  2.1  0.0 cp
  71339   67257 I          00:15  2.0  0.0 cp
  71342   68396 I          00:14  2.4  0.0 cp
  71345   68035 D          00:14  0.3  0.0 cp
  71348   66915 I          00:13  2.5  0.0 cp
  71355   37926 S          00:11  0.0  0.0 bash
  71361   69615 I          00:11  2.2  0.0 cp
  71364   66946 D          00:10  0.2  0.0 cp
  71368   67863 I          00:08  2.6  0.0 cp
  71374   68565 I          00:06  2.1  0.0 cp
  71377   67979 I          00:06  0.0  0.0 cp
  71439   70106 D          00:06  0.0  0.0 cp
  71442   67346 I          00:05  0.0  0.0 cp
  71500   67276 I          00:04  0.0  0.0 cp
  71523   69289 I          00:04  0.0  0.0 cp
  71542   68803 I          00:03  0.3  0.0 cp
  71566   71355 I          00:02  0.0  0.0 cp
  71569   68203 I          00:02  0.0  0.0 cp
  71596   69632 I          00:01  0.0  0.0 cp
  71603   67159 I          00:01  0.0  0.0 cp
  71615   67853 I          00:00  0.0  0.0 cp
  71618   66016 I          00:00  0.0  0.0 cp
  71623   69708 I          00:00  0.0  0.0 cp

scratch_summary:
1.3T	/fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch
5009
329
1780125255.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L008/C13.1/L008_2.cbcl
1780125255.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L008/C157.1/L008_1.cbcl
1780125255.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L008/C173.1/L008_1.cbcl
1780125255.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L008/C214.1/L008_2.cbcl
1780125255.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L008/C25.1/L008_2.cbcl
1780125255.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L008/C253.1/L008_1.cbcl
1780125255.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L008/C255.1/L008_2.cbcl
1780125255.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L008/C259.1/L008_1.cbcl
1780125255.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L008/C270.1/L008_2.cbcl
1780125255.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L008/C275.1/L008_2.cbcl
1780125255.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L008/C289.1/L008_2.cbcl
1780125255.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L008/C296.1/L008_1.cbcl
1780125255.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L008/C309.1/L008_1.cbcl
1780125255.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L008/C320.1/L008_2.cbcl
1780125255.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L008/C82.1/L008_2.cbcl
1780125255.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L008/C92.1/L008_2.cbcl
1780125256.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L003/C277.1/L003_1.cbcl
1780125256.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L007/C194.1/L007_1.cbcl
1780125256.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L007/C204.1/L007_2.cbcl
1780125256.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L007/C290.1/L007_2.cbcl

rsync_logs:
/fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/rsync_logs/cycle_dirs.txt
2576 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/rsync_logs/cycle_dirs.txt
/fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/rsync_logs/basecall_files.nul
0 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/rsync_logs/basecall_files.nul

run_log_tail:
run_bclconvert started: 2026-05-30T06:33:47+00:00
host: i192mem-dy-all-1
threads: 192
resources_mem_mb: 180000
TMPDIR: /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch
staging_mode: mounted_dev_shm
scratch_root: /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch
bcl_input_directory: /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/
source_s3_uri: s3://lsmc-ssf-sequencing-data/basecalls/lsmc/ssf-hq/LH01106/2026/20260514_LH01106_0009_B23TVLGLT4/
output_directory: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/fastqs
192
Filesystem               Size  Used Avail Use% Mounted on
10.0.1.96@tcp:/d4tzvb4v  8.8T  195G  8.6T   3% /fsx
10.0.1.96@tcp:/d4tzvb4v  8.8T  195G  8.6T   3% /fsx
/usr/bin/singularity
INFO:    Using cached SIF image
bcl-convert Version 00.000.000.4.0.3
Copyright (c) 2014-2018 Illumina, Inc. 
scratch_dir: /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306
scratch_input_basis: mounted_metadata_plus_lane_root
scratch_root_file_bytes: 4536017
scratch_intensities_file_bytes: 52032652
scratch_lane_root_disk_bytes: 92860928
scratch_input_disk_bytes: 149429597
scratch_input_apparent_bytes: 149429597
scratch_required_bytes: 1671460212
scratch_available_bytes: 9361524129792
Staging mounted BCL run directory to scratch: 2026-05-30T06:33:54+00:00
mounted_stage_lanes: L001 L002 L003 L004 L005 L006 L007 L008
mounted_stage_jobs: 64
mounted_stage_cycle_dirs: 2576
mounted_stage_regular_files: 11424
Copying mounted BCL files with sharded cp: 2026-05-30T06:34:06+00:00

slurm:
             JOBID PARTITION         NAME     USER ST       TIME  NODES NODELIST(REASON)
              2662      i192 seqfu-JEMILM   ubuntu CF       2:41      1 i192-dy-all-1
              2661      i192 fastqc_subsa   ubuntu CF       2:42      1 i192-dy-all-1
              2663   i192mem sentieon_bwa   ubuntu CF       2:39      1 i192mem-dy-all-2
              2660   i192mem run_bclconve   ubuntu  R      40:36      1 i192mem-dy-all-1
