Metadata-Version: 2.1
Name: dismal
Version: 0.1.19b0
Summary: Demographic inference from the distribution of pairwise segregating sites
License-File: LICENSE
Requires-Dist: numpy
Requires-Dist: pandas
Requires-Dist: setuptools
Requires-Dist: pyranges==0.0.129
Requires-Dist: scikit-allel
Requires-Dist: demes
Requires-Dist: demesdraw
Requires-Dist: matplotlib
Requires-Dist: msprime
Requires-Dist: seaborn
Requires-Dist: tqdm
Requires-Dist: tskit
Requires-Dist: prettytable
Requires-Dist: joblib

DISMaL: Demographic Inference under the Structured Coalescent using Maximum Likelihood
======================================================================================

``DISMaL`` is a Python package for inferring historical demographies
(specifically, population sizes, gene flow, and split times) from
sequence data. It is an implementation of the *Generalised
isolation-with-migration* (GIM) model of Costa & Wilkinson-Herbots
(2021). Please cite their paper if you use ``DISMaL`` in published work:

*Rui J. Costa, Hilde M. Wilkinson-Herbots (2021). Inference of gene flow
in the process of speciation: Efficient maximum-likelihood
implementation of a generalised isolation-with-migration model.
Theoretical Population Biology 140:1-15.
https://doi.org/10.1016/j.tpb.2021.03.001.*

Documentation is hosted on ReadTheDocs: https://dismal.readthedocs.io/en/latest/


Installation
------------

Install latest full release with Pip: `pip install dismal`

Or the development version from GitHub: `pip install git+https://github.com/simonharnqvist/DISMaL.git#egg=dismal`
