numpy<2.1,>=2.0
scipy<1.17,>=1.16
scikit-learn<1.8,>=1.7.2
pandas<2.3,>=2.2
joblib<1.6,>=1.5
tqdm<5,>=4.67
numba<0.61,>=0.60
llvmlite<0.44,>=0.43
umap-learn>=0.5.6
pynndescent<0.6,>=0.5.10
matplotlib>=3.9.4

[dev]
ruff
pytest
pytest-cov

[notebooks]
jupyterlab<5,>=4.2
ipykernel<7,>=6.29
ipywidgets>=8.1.7
plotly>=6.3.0
rpy2>=3.6.3
pyreadr>=0.5.3
scanpy>=1.11.4
scikit-misc>=0.5.1
anywidget>=0.9.18
igraph>=1.0.0
leidenalg>=0.11.0
pyteomics>=4.7.5
lxml>=6.0.2
scvi>=0.6.8
cmap>=0.7.0
glasbey>=0.3.0
