LICENSE.md
MANIFEST.in
README.md
requirements.txt
setup.py
spectre-license.md
ont_spectre.egg-info/PKG-INFO
ont_spectre.egg-info/SOURCES.txt
ont_spectre.egg-info/dependency_links.txt
ont_spectre.egg-info/entry_points.txt
ont_spectre.egg-info/not-zip-safe
ont_spectre.egg-info/requires.txt
ont_spectre.egg-info/top_level.txt
spectre/__init__.py
spectre/main.py
spectre/spectreCNV.py
spectre/spectreCNVPopulation.py
spectre/analysis/__init__.py
spectre/analysis/analysis.py
spectre/analysis/call_cnv_AF.py
spectre/analysis/call_cnv_coverage.py
spectre/analysis/cnv_candidate.py
spectre/analysis/cnv_metrics.py
spectre/analysis/coverage_stats.py
spectre/data/chm13v2_blacklist_v1.0.bed
spectre/data/chm13v2_metadata.mdr
spectre/data/hg19_blacklist_v1.0.bed
spectre/data/hg19_metadata.mdr
spectre/data/hg38_blacklist_v1.0.bed
spectre/data/hg38_metadata.mdr
spectre/plots/__init__.py
spectre/plots/plot.py
spectre/util/OSUtil.py
spectre/util/__init__.py
spectre/util/cnv_id.py
spectre/util/dataAnalyzer.py
spectre/util/mosdepthReader.py
spectre/util/outputWriter.py
spectre/util/vcf_parser.py
spectre/util/metadata/__init__.py
spectre/util/metadata/metadataCollector.py
tests/test_karyotype_prediction.py
tests/test_main.py
tests/analysis/__init__.py
tests/analysis/test_cnv_analysis.py