/target/
/.venv/
/.uv-cache/
/.pytest_cache/
/scratch/

__pycache__/
*.py[cod]
*.so
*.pyd
*.dylib

# External benchmark tools and generated results
/gnina
/gnina.bin
/smina
/vina
/qvina2
/lib/
/data/vina
/data/*_out.pdbqt
/data/*_docked.pdbqt

# Build artifacts
/dist/
/docked.pdbqt

# Large generated docs (benchmarks — too big for IDE indexing)
docs/DUDE_EGFR_*.json

# Local editor and agent artifacts
/.hermes/
/.antigravitycli/
/.omo/
/.vscode/
implementation_plan.md
task.md
walkthrough.md
*.pdf
uv.lock
