{#
  Longitudinal (timeline) chimerism report, PDF layout (issue #35). Mirrors the
  HTML timeline (timeline.html) but suppresses the inline "how it works"
  disclosures and collects them into a "Methods and notes" appendix, like
  pdf/report.html. The trend chart is the same base64 PNG the HTML timeline
  embeds. Override via --template with a pdf/timeline.html.
#}
{% extends "base.html" %}
{% import "macros.html" as m %}
{% block body %}
<div class="doc-running-header">{{ title }}</div>
{{ m.header(header_rows) }}

<section class="section headline">
<h2>Latest result</h2>
<div class="headline-grid">
<div class="figure-card verdict">
<div class="figure-label">Latest QC verdict</div>
<div>{{ badge(headline.status, large=True) }}</div>
</div>
{{ m.figure_card("Donor fraction (latest)", headline.latest_pct | pct_value, ci(headline.latest_ci_lo, headline.latest_ci_hi, as_pct=False)) }}
{% if headline.has_prev %}
{{ m.figure_card("Previous", headline.prev_pct | pct_value) }}
{% if headline.delta %}
{{ m.figure_card("Change", headline.delta) }}
{% endif %}
{% endif %}
</div>
</section>

<section class="section">
<h2>Trend</h2>
{% if chart_uri %}
<div class="chart"><img alt="Chimerism trend across timepoints" src="{{ chart_uri }}"></div>
{% elif chart_note %}
<p class="muted small">{{ chart_note }}</p>
{% endif %}
</section>

<section class="section">
<h2>Timepoints</h2>
<table>
<thead><tr><th>Timepoint</th><th class="num">Donor %</th><th class="num">95% CI</th><th class="num">Mean depth</th><th class="num">GoF p</th><th>QC</th></tr></thead>
<tbody>
{% for row in table_rows %}
<tr><td>{{ row.label }}</td><td class="num">{{ row.donor_pct | pct_value }}</td><td class="num">{{ ci(row.ci_lo, row.ci_hi, 2, as_pct=False) }}</td><td class="num">{{ (row.depth | num(0)) ~ "x" if row.depth is not none else NA }}</td><td class="num">{{ row.gof | pval }}</td><td class="status-cell">{{ badge(row.status) }}</td></tr>
{% endfor %}
</tbody>
</table>
</section>

{{ m.host_presence(host_presence.hp, host_presence.detected, show_help=False) }}
{{ m.qc_panel(qc, show_help=False) }}
{{ m.footer(version, params, citation, timestamp, show_run_command=False) }}

<section class="section methods-appendix">
<h2>Methods and notes</h2>
{{ m.help_host_presence() }}
{{ m.help_qc() }}
{{ m.run_command(params) }}
</section>
{% endblock %}