.editorconfig
.gitignore
.pre-commit-config.yaml
.readthedocs.yaml
CONTRIBUTING.md
LICENSE
README.md
conftest.py
mkdocs.yml
pyproject.toml
.github/workflows/code-quality-main.yaml
.github/workflows/code-quality-pr.yaml
.github/workflows/python-build.yaml
.github/workflows/tests.yaml
docs/gen_ref_pages.py
docs/index.md
docs/javascripts/mathjax.js
example/README.md
example/event_cfg.yaml
example/example.ipynb
example/raw_data/diagnoses.csv
example/raw_data/labs_vitals.csv
example/raw_data/medications.csv
example/raw_data/patients.csv
src/MEDS_extract/__init__.py
src/MEDS_extract/parsing.py
src/MEDS_extract.egg-info/PKG-INFO
src/MEDS_extract.egg-info/SOURCES.txt
src/MEDS_extract.egg-info/dependency_links.txt
src/MEDS_extract.egg-info/entry_points.txt
src/MEDS_extract.egg-info/requires.txt
src/MEDS_extract.egg-info/top_level.txt
src/MEDS_extract/configs/__init__.py
src/MEDS_extract/configs/_extract.yaml
src/MEDS_extract/convert_to_MEDS_events/__init__.py
src/MEDS_extract/convert_to_MEDS_events/config.yaml
src/MEDS_extract/convert_to_MEDS_events/convert_to_MEDS_events.py
src/MEDS_extract/convert_to_subject_sharded/__init__.py
src/MEDS_extract/convert_to_subject_sharded/convert_to_subject_sharded.py
src/MEDS_extract/extract_code_metadata/__init__.py
src/MEDS_extract/extract_code_metadata/config.yaml
src/MEDS_extract/extract_code_metadata/extract_code_metadata.py
src/MEDS_extract/extract_code_metadata/utils.py
src/MEDS_extract/finalize_MEDS_data/__init__.py
src/MEDS_extract/finalize_MEDS_data/finalize_MEDS_data.py
src/MEDS_extract/finalize_MEDS_metadata/__init__.py
src/MEDS_extract/finalize_MEDS_metadata/finalize_MEDS_metadata.py
src/MEDS_extract/merge_to_MEDS_cohort/__init__.py
src/MEDS_extract/merge_to_MEDS_cohort/config.yaml
src/MEDS_extract/merge_to_MEDS_cohort/merge_to_MEDS_cohort.py
src/MEDS_extract/shard_events/__init__.py
src/MEDS_extract/shard_events/config.yaml
src/MEDS_extract/shard_events/shard_events.py
src/MEDS_extract/split_and_shard_subjects/__init__.py
src/MEDS_extract/split_and_shard_subjects/config.yaml
src/MEDS_extract/split_and_shard_subjects/split_and_shard_subjects.py
static/logo_dark.svg
static/logo_light.svg
tests/__init__.py
tests/test_convert_to_MEDS_events.py
tests/test_convert_to_subject_sharded.py
tests/test_extract_code_metadata.py
tests/test_finalize_MEDS_data.py
tests/test_finalize_MEDS_metadata.py
tests/test_merge_to_MEDS_cohort.py
tests/test_shard_events.py
tests/test_split_and_shard_subjects.py
tests/utils.py