CHANGELOG.md
CITATION.cff
CONTRIBUTING.md
DEVELOPMENT.md
LICENSE
MANIFEST.in
README.md
RELEASE_NOTES.md
THIRD_PARTY_NOTICES.md
VALIDATION_REPORT.md
VERSION
VERSION_HISTORY.md
environment.yml
pyproject.toml
setup.cfg
src/hcrprobeforge/__init__.py
src/hcrprobeforge/__main__.py
src/hcrprobeforge/batch.py
src/hcrprobeforge/cli.py
src/hcrprobeforge/core.py
src/hcrprobeforge/premrna.py
src/hcrprobeforge/references.py
src/hcrprobeforge/webapp.py
src/hcrprobeforge/assets/hcrprobeforge-logo.svg
tests/test_batch_resume.py
tests/test_platform_integration.py
tests/test_plotting.py
tests/test_premrna.py
tests/test_reference_download.py
tests/test_species_deletion.py
tests/test_webapp_security.py
tools/check_release_artifacts.py