bamnado>=0.5.6
dask-ml<2027,>=2025
dask>=2026
loguru>=0.7
matplotlib==3.10.8
numpy<3.0,>=2.0
pandas<4.0,>=3.0
pyBigWig>=0.3
pyranges1>=1.0
pysam>=0.23
scikit-allel>=1.3
seaborn>=0.13
sparse>=0.18
tqdm>=4.67
typer>=0.24
xarray>=2026
zarr<4.0,>=3.1.5
plotnado>=0.3
pytest>=9.0.2

[dev]
mkdocs-material==9.7.4
mkdocs<2.0,>=1.6
mkdocs-jupyter==0.25.1
mkdocstrings-python==2.0.3
mkdocstrings==1.0.3
pymdown-extensions==10.21
pytest==9.0.2
pytest-cov==7.0.0
pytest-xdist>=3.0
ruff==0.15.4

[example]
ipykernel<7.3.0,>6.0.0
jupyterlab==4.5.5

[gpu]
torch>=2.0

[lanceotron]
torch>=2.0
scipy>=1.10

[numba]
numba>=0.59
