mtb-resistotyper-ml
Two-layer resistance calls for M. tuberculosis. The curated WHO catalogue answers what it can grade; models answer the rest, and every row says which.
- Upload a VCF to the cluster —
abc data upload <file>, or the browser upload page. - Pick it below, choose a reference database, and run.
- Download the predictions, the reasoning, and a record of what was read.
Research use only. Not a diagnostic. Layer 2 models have not been
prospectively validated and have no regulatory clearance. Do not use any output on this
page to guide the treatment of a patient.
1 · Choose an uploaded VCF
…or upload a file directly
For a file that is not on the cluster.
2 · Reference database
Where the catalogue grades no mutation, Layer 2 answers with the regularised logistic-regression model trained on the release you pick. Layer 1 is the WHO catalogue either way.