LICENSE
MANIFEST.in
README.md
requirements-dev.txt
requirements.txt
setup.py
tests/test_custom.py
tests/test_probe.py
tests/test_workflow.py
uprobe/__init__.py
uprobe/__main__.py
uprobe.egg-info/PKG-INFO
uprobe.egg-info/SOURCES.txt
uprobe.egg-info/dependency_links.txt
uprobe.egg-info/entry_points.txt
uprobe.egg-info/not-zip-safe
uprobe.egg-info/requires.txt
uprobe.egg-info/top_level.txt
uprobe/core/.readthedocs.yaml
uprobe/core/__init__.py
uprobe/core/api.py
uprobe/core/cli.py
uprobe/core/utils.py
uprobe/core/agent/__init__.py
uprobe/core/agent/output_sandbox.py
uprobe/core/agent/repl_bootstrap.py
uprobe/core/agent/session_manager.py
uprobe/core/agent/templates/DEFAULT_PROTOCOL.yaml
uprobe/core/agent/templates/uprobe_team.md
uprobe/core/attributes/__init__.py
uprobe/core/attributes/_attributes.py
uprobe/core/gen/__init__.py
uprobe/core/gen/barcodes.py
uprobe/core/gen/fun.py
uprobe/core/gen/probe.py
uprobe/core/gen/utils.py
uprobe/core/process/__init__.py
uprobe/core/process/equal_space.py
uprobe/core/process/otp.py
uprobe/core/process/summary.py
uprobe/core/report/__init__.py
uprobe/core/report/html.py
uprobe/core/report/plot.py
uprobe/core/tools/__init__.py
uprobe/core/tools/aligner.py
uprobe/core/tools/kmerFilter.py
uprobe/http/__init__.py
uprobe/http/__main__.py
uprobe/http/server.py
uprobe/http/routers/__init__.py
uprobe/http/routers/agent.py
uprobe/http/routers/auth.py
uprobe/http/routers/custom_probes.py
uprobe/http/routers/genome.py
uprobe/http/routers/task.py
uprobe/http/routers/user.py
uprobe/http/routers/workflow.py
uprobe/http/utils/__init__.py
uprobe/http/utils/agent_store.py
uprobe/http/utils/file.py
uprobe/http/utils/logger.py
uprobe/http/utils/paths.py
uprobe/http/utils/probe.py
uprobe/http/utils/process_pool.py
uprobe/http/utils/task_queue.py
uprobe/http/utils/uprobe_runner.py
uprobe/http/utils/utils.py