# Git metadata (not needed in the image)
.git
.gitignore

# Python build artefacts
**/__pycache__/
**/*.py[cod]
**/*.egg-info/
dist/
build/
.eggs/

# Test / lint caches
.pytest_cache/
.ruff_cache/
.mypy_cache/
.tox/

# Example data (large FASTA; users mount their own data at /data)
docs/example/*.fa
docs/example/*.gff*
docs/example/*.log

# Editor / OS artefacts
**/.DS_Store
**/*.swp
**/*.swo
.vscode/
.idea/
