LICENSE
MANIFEST.in
README.md
pyproject.toml
reconstruct.py
configs/application/Visium.yaml
configs/application/VisiumHD.yaml
configs/application/Xenium_Fib.yaml
configs/application/Xenium_Mono.yaml
configs/application/Xenium_T.yaml
configs/benchmark/batch_effect.yaml
configs/benchmark/bin2cell.yaml
configs/benchmark/gene_dropout.yaml
configs/benchmark/gene_panel.yaml
configs/benchmark/segmentation.yaml
configs/benchmark/spot_size.yaml
constraints/python-3.10.txt
constraints/python-3.11.txt
reproduce/benchmark_main.py
reproduce/benchmark_main.sh
revise/__init__.py
revise/_version.py
revise/framework.py
revise/analysis/__init__.py
revise/analysis/bio.py
revise/analysis/biological_metrics.py
revise/analysis/cli.py
revise/analysis/metrics.py
revise/analysis/services.py
revise/analysis/advanced/__init__.py
revise/analysis/advanced/aucell.py
revise/analysis/advanced/cell_communication.py
revise/analysis/advanced/enrichment.py
revise/analysis/advanced/trajectory.py
revise/analysis/basic/__init__.py
revise/analysis/basic/differential_expression.py
revise/analysis/basic/gene_set_scoring.py
revise/analysis/basic/spatial_autocorrelation.py
revise/analysis/basic/unsupervised.py
revise/application/__init__.py
revise/application/config.py
revise/application/preprocess.py
revise/application/publication.py
revise/application/templates/Visium.yaml
revise/application/templates/VisiumHD.yaml
revise/application/templates/Xenium_Fib.yaml
revise/application/templates/Xenium_Mono.yaml
revise/application/templates/Xenium_T.yaml
revise/backend/__init__.py
revise/backend/adapters.py
revise/backend/contracts.py
revise/backend/policies.py
revise/backend/registry.py
revise/backend/kernels/__init__.py
revise/backend/kernels/base.py
revise/backend/kernels/factory.py
revise/backend/kernels/gene_impute.py
revise/backend/kernels/gene_uncertainty.py
revise/backend/kernels/global_anchoring.py
revise/backend/kernels/graph_aggregate.py
revise/backend/kernels/graph_cluster.py
revise/backend/kernels/local_anchoring.py
revise/backend/kernels/ot.py
revise/backend/kernels/seg_evaluate.py
revise/backend/kernels/spot_sr.py
revise/backend/ops/__init__.py
revise/backend/ops/assignment.py
revise/backend/ops/coefficients.py
revise/backend/ops/distance.py
revise/backend/ops/meta.py
revise/backend/ops/posterior_conditioning.py
revise/backend/ops/shaver.py
revise/backend/ops/sr_allocation.py
revise/backend/ops/tacco_runtime.py
revise/backend/ops/topology.py
revise/backend/runners/__init__.py
revise/backend/runners/application_svc.py
revise/backend/runners/base_svc.py
revise/backend/runners/benchmark_svc.py
revise/backend/runners/sc_svc_application.py
revise/backend/runners/sc_svc_impute_benchmark.py
revise/backend/runners/sc_svc_sr_application.py
revise/backend/runners/sc_svc_sr_benchmark.py
revise/backend/runners/sp_svc_application.py
revise/backend/runners/sp_svc_assignment.py
revise/backend/runners/sp_svc_benchmark.py
revise/benchmark/__init__.py
revise/benchmark/cli.py
revise/benchmark/launcher.py
revise/benchmark/templates/batch_effect.yaml
revise/benchmark/templates/bin2cell.yaml
revise/benchmark/templates/gene_dropout.yaml
revise/benchmark/templates/gene_panel.yaml
revise/benchmark/templates/segmentation.yaml
revise/benchmark/templates/spot_size.yaml
revise/config/__init__.py
revise/config/authority.py
revise/config/loader.py
revise/config/runner_conf.py
revise/io/__init__.py
revise/io/input_service.py
revise/io/spatialdata_service.py
revise/preprocess/__init__.py
revise/preprocess/cli.py
revise/preprocess/histology_priors.py
revise/recon/__init__.py
revise/recon/context.py
revise/recon/pipeline.py
revise/svc/__init__.py
revise/svc/model.py
revise/utils/__init__.py
revise/utils/deterministic.py
revise/utils/format.py
revise/utils/io.py
revise/utils/logging.py
revise/utils/provenance.py
revise/utils/spot_sr_input.py
revise_svc.egg-info/PKG-INFO
revise_svc.egg-info/SOURCES.txt
revise_svc.egg-info/dependency_links.txt
revise_svc.egg-info/entry_points.txt
revise_svc.egg-info/requires.txt
revise_svc.egg-info/top_level.txt