CHANGELOG.md
LICENSE
MANIFEST.in
README.md
pyproject.toml
cellqc/Snakefile
cellqc/__init__.py
cellqc/cli.py
cellqc/qcutil.py
cellqc/reportdata.py
cellqc.egg-info/PKG-INFO
cellqc.egg-info/SOURCES.txt
cellqc.egg-info/dependency_links.txt
cellqc.egg-info/entry_points.txt
cellqc.egg-info/requires.txt
cellqc.egg-info/top_level.txt
cellqc/rules/ambient.smk
cellqc/rules/barcoderank.smk
cellqc/rules/common.smk
cellqc/rules/config.smk
cellqc/rules/doubletfinder.smk
cellqc/rules/filterbycount.smk
cellqc/rules/filterdoublet.smk
cellqc/rules/nuclear_fraction.smk
cellqc/rules/postproc.smk
cellqc/rules/qcreport.smk
cellqc/rules/scdblfinder.smk
cellqc/rules/slidereport.smk
cellqc/schemas/config.schema.yaml
cellqc/schemas/samples.schema.yaml
cellqc/scripts/ambient.R
cellqc/scripts/barcoderank.py
cellqc/scripts/doubletfinder.R
cellqc/scripts/filterbycount.py
cellqc/scripts/filterdoublet.py
cellqc/scripts/nuclear_fraction.py
cellqc/scripts/postproc.py
cellqc/scripts/qcreport.py
cellqc/scripts/scdblfinder.R
cellqc/scripts/slidereport.py
cellqc/scripts/template/index.html.jinja2
cellqc/scripts/template/slides.tex.jinja2
cellqc/scripts/template/style.css
envs/cellqc.yaml