LICENSE
README.md
pyproject.toml
spatio_flux/__init__.py
spatio_flux/_node_figures.py
spatio_flux/core.py
spatio_flux/evaluators.py
spatio_flux/paper_figures.py
spatio_flux/vivarium_tests.py
spatio_flux.egg-info/PKG-INFO
spatio_flux.egg-info/SOURCES.txt
spatio_flux.egg-info/dependency_links.txt
spatio_flux.egg-info/requires.txt
spatio_flux.egg-info/top_level.txt
spatio_flux/analysis/__init__.py
spatio_flux/analysis/flush.py
spatio_flux/analysis/flush_spec.py
spatio_flux/analysis/steps.py
spatio_flux/composites/__init__.py
spatio_flux/composites/_constants.py
spatio_flux/composites/_serialize.py
spatio_flux/composites/comets.py
spatio_flux/composites/figures.py
spatio_flux/composites/metabolism.py
spatio_flux/composites/particles.py
spatio_flux/composites/reference.py
spatio_flux/composites/spatial.py
spatio_flux/experiments/__init__.py
spatio_flux/experiments/compare_comets.py
spatio_flux/experiments/count_conc.py
spatio_flux/experiments/figure_A.py
spatio_flux/experiments/figure_B.py
spatio_flux/experiments/overview_fig.py
spatio_flux/experiments/scenarios.py
spatio_flux/library/__init__.py
spatio_flux/library/highs_solver.py
spatio_flux/library/parallel_composite.py
spatio_flux/library/ray_process.py
spatio_flux/library/shard_manager.py
spatio_flux/library/tools.py
spatio_flux/plots/__init__.py
spatio_flux/plots/colors.py
spatio_flux/plots/multibody_plots.py
spatio_flux/plots/plot.py
spatio_flux/processes/__init__.py
spatio_flux/processes/configs.py
spatio_flux/processes/dfba.py
spatio_flux/processes/diffusion_advection.py
spatio_flux/processes/monod_kinetics.py
spatio_flux/processes/particles.py
spatio_flux/processes/pymunk_particles.py
spatio_flux/runners/__init__.py
spatio_flux/runners/run_store.py
spatio_flux/runners/run_study.py
spatio_flux/types/__init__.py
spatio_flux/types/counts.py
spatio_flux/types/positive.py
spatio_flux/visualizations/__init__.py
spatio_flux/visualizations/field_animation_gif.py
spatio_flux/visualizations/field_heatmap.py
spatio_flux/visualizations/field_snapshots.py
spatio_flux/visualizations/particle_traces.py
spatio_flux/visualizations/test_suite_timeseries.py
tests/test_analysis_flush.py
tests/test_composite_generators.py
tests/test_demo_visualizations.py
tests/test_evaluators.py
tests/test_fidelity.py
tests/test_report.py
tests/test_types_units_contracts.py
tests/test_workspace_investigation.py