# Byte-compiled / optimized / DLL files
__pycache__/
*.py[cod]
*$py.class

# Virtual environments
venv/
env/
.venv/
.env/

# Distribution / packaging
build/
dist/
*.egg-info/
.eggs/

# Installer logs
pip-log.txt
pip-delete-this-directory.txt

# Unit test / coverage reports
htmlcov/
.tox/
.nox/
.coverage
.cache
.pytest_cache/
nosetests.xml
coverage.xml
*.cover
.hypothesis/

# Jupyter Notebook checkpoints
.ipynb_checkpoints

# pyenv
.python-version

# mypy
.mypy_cache/
.dmypy.json
dmypy.json

# Pyre type checker
.pyre/

# IDEs and editors
.vscode/
.idea/
*.sublime-project
*.sublime-workspace

# MacOS
.DS_Store

# Windows
Thumbs.db
ehthumbs.db
Desktop.ini

# dotenv
*.env
*.env.*

# Logs
*.log

# Local config
*.local

data/*
retired/*
tests/*
CTCF_mutations_analyses/*
perl/*
GM12878/*
outfiles/*
out2/*
old/*
\*.egg-info/
build/
dist/
__pycache__/
FOXK2/*
retired_eubar/*
tests_old/*
ABC/*
docs/old/*
eubar_oldest_main_working/*
adastra/*
GM_all_tfs/*
SEM/*
test_params/*
eubar.zip
figures/*
eubar/snv_pooled.py
eubar/snv_indel.py
out/
test_figures/
dev/*
.Rproj.user
SNP-SELEX_analysis/*
indel_test/*
T47D_FOXA1_motif-fix/*