LICENSE
MANIFEST.in
README.md
README_PyPi.md
pyproject.toml
MetaXTools.egg-info/PKG-INFO
MetaXTools.egg-info/SOURCES.txt
MetaXTools.egg-info/dependency_links.txt
MetaXTools.egg-info/entry_points.txt
MetaXTools.egg-info/requires.txt
MetaXTools.egg-info/top_level.txt
metax/__init__.py
metax/assets/pyecharts/echarts-gl.min.js
metax/assets/pyecharts/echarts.min.js
metax/cli/__init__.py
metax/cli/annotate.py
metax/data/enzyme.dat
metax/data/ko.tsv
metax/data/module.tsv
metax/data/pathway.tsv
metax/data/example_data/Example_Meta.tsv
metax/data/example_data/Example_OTF.tsv
metax/data/example_data/Example_Taxa.tsv
metax/data/example_data/Example_annotation.tsv
metax/data/example_data/Example_final_peptide.tsv
metax/database_builder/__init__.py
metax/database_builder/database_builder_mag.py
metax/database_builder/database_builder_own.py
metax/database_builder/download_mgyg_faa.py
metax/database_builder/mgnify_sources.py
metax/database_updater/__init__.py
metax/database_updater/database_updater.py
metax/gui/__init__.py
metax/gui/main_gui.py
metax/gui/unit_specific_settings_dialog.py
metax/gui/metax_gui/__init__.py
metax/gui/metax_gui/auto_otf_report_dialog.py
metax/gui/metax_gui/checkable_combo_box.py
metax/gui/metax_gui/cmap_combo_box.py
metax/gui/metax_gui/command_window.py
metax/gui/metax_gui/console_window.py
metax/gui/metax_gui/drag_line_edit.py
metax/gui/metax_gui/extended_combo_box.py
metax/gui/metax_gui/generic_thread.py
metax/gui/metax_gui/input_window.py
metax/gui/metax_gui/matplotlib_figure_canvas.py
metax/gui/metax_gui/settings_widget.py
metax/gui/metax_gui/show_plt.py
metax/gui/metax_gui/show_plt_dialog.py
metax/gui/metax_gui/tfnet_helpers.py
metax/gui/metax_gui/ui_func_threshold_help.py
metax/gui/metax_gui/ui_lca_help.py
metax/gui/metax_gui/ui_main_window.py
metax/gui/metax_gui/ui_setting_window.py
metax/gui/metax_gui/ui_table_view.py
metax/gui/metax_gui/user_agreement_dialog.py
metax/gui/metax_gui/web_dialog.py
metax/gui/metax_gui/resources/FUNC_prop.png
metax/gui/metax_gui/resources/LCA_prop.png
metax/gui/metax_gui/resources/NorthOmics_logo.png
metax/gui/metax_gui/resources/icon.qrc
metax/gui/metax_gui/resources/icon_rc.py
metax/gui/metax_gui/resources/logo.png
metax/peptide_annotator/__init__.py
metax/peptide_annotator/convert_id_to_name.py
metax/peptide_annotator/digested_scan_cli.py
metax/peptide_annotator/get_genome_rank.py
metax/peptide_annotator/metalab2otf.py
metax/peptide_annotator/pep_table_to_otf.py
metax/peptide_annotator/peptable_annotator.py
metax/peptide_annotator/peptide_coverage_ranker.py
metax/peptide_annotator/peptide_table_prepare.py
metax/peptide_annotator/proteins_to_taxafunc.py
metax/peptide_annotator/unit_specific_manifest.py
metax/peptide_annotator/unit_specific_otf.py
metax/report/__init__.py
metax/report/cli.py
metax/report/config.py
metax/report/html_report.py
metax/report/paths.py
metax/report/plot_builder.py
metax/report/registry.py
metax/report/reproducibility.py
metax/report/stats_builder.py
metax/report/table_builder.py
metax/report/workflow.py
metax/report/templates/figure_tile.html.j2
metax/report/templates/report.html.j2
metax/report/templates/section_basic_plots.html.j2
metax/report/templates/section_overview.html.j2
metax/report/templates/section_statistics.html.j2
metax/report/templates/section_summary.html.j2
metax/report/templates/section_tables.html.j2
metax/report/templates/section_taxa_function.html.j2
metax/report/templates/section_warnings.html.j2
metax/taxafunc_analyzer/analyzer.py
metax/taxafunc_analyzer/analyzer_utils/__init__.py
metax/taxafunc_analyzer/analyzer_utils/basic_stats.py
metax/taxafunc_analyzer/analyzer_utils/cross_test.py
metax/taxafunc_analyzer/analyzer_utils/data_preprocessing.py
metax/taxafunc_analyzer/analyzer_utils/get_matrix.py
metax/taxafunc_analyzer/analyzer_utils/lfq.py
metax/taxafunc_analyzer/analyzer_utils/razor_sum.py
metax/taxafunc_analyzer/analyzer_utils/re_combat.py
metax/taxafunc_analyzer/analyzer_utils/sum_protein_intensity.py
metax/taxafunc_ploter/__init__.py
metax/taxafunc_ploter/bar_plot_js.py
metax/taxafunc_ploter/basic_plot.py
metax/taxafunc_ploter/diversity_plot.py
metax/taxafunc_ploter/get_distinct_colors.py
metax/taxafunc_ploter/heatmap_plot.py
metax/taxafunc_ploter/line_plot.py
metax/taxafunc_ploter/network_plot.py
metax/taxafunc_ploter/pca_plot_js.py
metax/taxafunc_ploter/sankey_plot.py
metax/taxafunc_ploter/sunburst_plot.py
metax/taxafunc_ploter/treemap_plot.py
metax/taxafunc_ploter/trends_plot.py
metax/taxafunc_ploter/trends_plot_js.py
metax/taxafunc_ploter/tukey_plot.py
metax/taxafunc_ploter/volcano_plot.py
metax/taxafunc_ploter/volcano_plot_js.py
metax/taxafunc_ploter/test_scripts/universal_sankey.py
metax/tests/__init__.py
metax/tests/test_metax.py
metax/utils/__init__.py
metax/utils/deseq2_res_extractor.py
metax/utils/lightweight_diversity.py
metax/utils/metax_updater.py
metax/utils/version.py
metax/utils/workflow.py
metax/workflow_recorder/__init__.py
metax/workflow_recorder/recorder.py
tests/test_analyzer.py
tests/test_auto_report_config.py
tests/test_auto_report_dialog.py
tests/test_auto_report_stats.py
tests/test_auto_report_workflow.py
tests/test_basic_plot.py
tests/test_basic_stats.py
tests/test_complex_plots.py
tests/test_convert_id_to_name.py
tests/test_cross_test.py
tests/test_data_preprocessing.py
tests/test_database_updater.py
tests/test_get_matrix.py
tests/test_gui_memory_optimizations.py
tests/test_heatmap_edge_cases.py
tests/test_heatmap_nan_preserve.py
tests/test_interactive_plots.py
tests/test_metax_updater_dependencies.py
tests/test_mgnify_sources.py
tests/test_pep_table_to_otf_dataframe.py
tests/test_peptable_annotator.py
tests/test_peptide_table_prepare.py
tests/test_proportion_plots.py
tests/test_protein_quant.py
tests/test_unit_specific_gui_settings_dialog.py
tests/test_unit_specific_manifest.py
tests/test_unit_specific_otf.py
tests/test_workflow_recorder.py