CHANGELOG.md
LICENSE
MANIFEST.in
README.md
pyproject.toml
mlsurv/__init__.py
mlsurv/_calibration_thresholds.py
mlsurv/_iter_warn.py
mlsurv/_loky_patch.py
mlsurv/_patient_select.py
mlsurv/_shared.py
mlsurv/_warnings.py
mlsurv/constants.py
mlsurv/exceptions.py
mlsurv/guidance.py
mlsurv/logging_utils.py
mlsurv/py.typed
mlsurv/utils.py
mlsurv.egg-info/PKG-INFO
mlsurv.egg-info/SOURCES.txt
mlsurv.egg-info/dependency_links.txt
mlsurv.egg-info/entry_points.txt
mlsurv.egg-info/requires.txt
mlsurv.egg-info/top_level.txt
mlsurv/cli/__init__.py
mlsurv/cli/__main__.py
mlsurv/cli/_artifacts.py
mlsurv/cli/_commands.py
mlsurv/cli/_data.py
mlsurv/cli/_exit_codes.py
mlsurv/cli/_helpers.py
mlsurv/cli/_output.py
mlsurv/cli/_parsers.py
mlsurv/cli/_plot.py
mlsurv/evaluation/__init__.py
mlsurv/evaluation/_bootstrap_iteration.py
mlsurv/evaluation/_bootstrap_workers.py
mlsurv/evaluation/_calibrators.py
mlsurv/evaluation/_coefficients.py
mlsurv/evaluation/_concordance.py
mlsurv/evaluation/_config.py
mlsurv/evaluation/_ctd.py
mlsurv/evaluation/_diagnostics.py
mlsurv/evaluation/_explain.py
mlsurv/evaluation/_feature_summary.py
mlsurv/evaluation/_incremental.py
mlsurv/evaluation/_interactions.py
mlsurv/evaluation/_paired_comparison.py
mlsurv/evaluation/_prediction_bootstrap.py
mlsurv/evaluation/_prediction_helpers.py
mlsurv/evaluation/_recalibration.py
mlsurv/evaluation/_shap.py
mlsurv/evaluation/_subpopulation.py
mlsurv/evaluation/_univariate_cox.py
mlsurv/evaluation/bootstrap.py
mlsurv/evaluation/evaluate.py
mlsurv/evaluation/helpers.py
mlsurv/evaluation/importance.py
mlsurv/evaluation/metrics.py
mlsurv/learner/__init__.py
mlsurv/learner/_benchmarking.py
mlsurv/learner/_config.py
mlsurv/learner/_core.py
mlsurv/learner/_cv_training.py
mlsurv/learner/_eval_context.py
mlsurv/learner/_eval_times.py
mlsurv/learner/_evaluation.py
mlsurv/learner/_evaluation_bootstrap.py
mlsurv/learner/_evaluation_core.py
mlsurv/learner/_evaluation_helpers.py
mlsurv/learner/_evaluation_interactions.py
mlsurv/learner/_explain.py
mlsurv/learner/_export.py
mlsurv/learner/_format.py
mlsurv/learner/_patient_report.py
mlsurv/learner/_patient_report_html.py
mlsurv/learner/_patient_report_template.py
mlsurv/learner/_patient_resolve.py
mlsurv/learner/_persistence.py
mlsurv/learner/_prediction.py
mlsurv/learner/_recalibration.py
mlsurv/learner/_references.py
mlsurv/learner/_reports.py
mlsurv/learner/_setup.py
mlsurv/learner/_state.py
mlsurv/learner/_studies.py
mlsurv/learner/_sweep.py
mlsurv/learner/_training.py
mlsurv/learner/_tuning.py
mlsurv/learner/_views.py
mlsurv/learner/_visualization.py
mlsurv/models/__init__.py
mlsurv/models/_auto_defaults.py
mlsurv/models/_metadata.py
mlsurv/models/_overflow.py
mlsurv/models/_reference_adapter.py
mlsurv/models/base.py
mlsurv/models/coxnet.py
mlsurv/models/coxph.py
mlsurv/models/deephit.py
mlsurv/models/deepsurv.py
mlsurv/models/fssvm.py
mlsurv/models/gbsa.py
mlsurv/models/rsf.py
mlsurv/models/weibull_aft.py
mlsurv/models/xgbaft.py
mlsurv/models/xgbcox.py
mlsurv/preprocessing/__init__.py
mlsurv/preprocessing/_cox_fit.py
mlsurv/preprocessing/indicators.py
mlsurv/preprocessing/pipelines.py
mlsurv/preprocessing/selection.py
mlsurv/preprocessing/utils.py
mlsurv/reports/__init__.py
mlsurv/reports/_constants.py
mlsurv/reports/_figure_export.py
mlsurv/reports/_helpers.py
mlsurv/reports/_text.py
mlsurv/reports/generator.py
mlsurv/reports/renderers/__init__.py
mlsurv/reports/renderers/_figures.py
mlsurv/reports/renderers/_scripts.py
mlsurv/reports/renderers/_styles.py
mlsurv/reports/renderers/html.py
mlsurv/reports/renderers/manuscript.py
mlsurv/reports/renderers/markdown.py
mlsurv/reports/sections/__init__.py
mlsurv/reports/sections/_metric_glossary.py
mlsurv/reports/sections/_subsection_base.py
mlsurv/reports/sections/_trained_details.py
mlsurv/reports/sections/base.py
mlsurv/reports/sections/benchmarking.py
mlsurv/reports/sections/data_preprocessing.py
mlsurv/reports/sections/environment.py
mlsurv/reports/sections/limitations.py
mlsurv/reports/sections/model_development.py
mlsurv/reports/sections/references.py
mlsurv/reports/sections/subpopulation_analysis.py
mlsurv/reports/sections/summary.py
mlsurv/reports/sections/tripod_checklist.py
mlsurv/reports/sections/evaluation/__init__.py
mlsurv/reports/sections/evaluation/_base.py
mlsurv/reports/sections/evaluation/_calibration.py
mlsurv/reports/sections/evaluation/_discrimination.py
mlsurv/reports/sections/evaluation/_helpers.py
mlsurv/reports/sections/evaluation/_methodology.py
mlsurv/reports/sections/evaluation/_paired_comparison.py
mlsurv/reports/sections/evaluation/_performance.py
mlsurv/reports/sections/evaluation/_roc.py
mlsurv/reports/sections/evaluation/_section.py
mlsurv/reports/sections/evaluation/_stratification.py
mlsurv/reports/sections/feature_analysis/__init__.py
mlsurv/reports/sections/feature_analysis/_audit.py
mlsurv/reports/sections/feature_analysis/_coefficient_analysis.py
mlsurv/reports/sections/feature_analysis/_coefficients.py
mlsurv/reports/sections/feature_analysis/_correlation.py
mlsurv/reports/sections/feature_analysis/_hazard_ratios.py
mlsurv/reports/sections/feature_analysis/_helpers.py
mlsurv/reports/sections/feature_analysis/_importance.py
mlsurv/reports/sections/feature_analysis/_interactions.py
mlsurv/reports/sections/feature_analysis/_interactive_table.py
mlsurv/reports/sections/feature_analysis/_section.py
mlsurv/reports/sections/feature_analysis/_shap.py
mlsurv/reports/sections/validation/__init__.py
mlsurv/reports/sections/validation/_base.py
mlsurv/reports/sections/validation/_bootstrap.py
mlsurv/reports/sections/validation/_calibration.py
mlsurv/reports/sections/validation/_discrimination.py
mlsurv/reports/sections/validation/_helpers.py
mlsurv/reports/sections/validation/_performance_drop.py
mlsurv/reports/sections/validation/_section.py
mlsurv/reports/sections/validation/_stratification.py
mlsurv/reports/sections/validation/_table1.py
mlsurv/results/__init__.py
mlsurv/results/_containers_extraction.py
mlsurv/results/_containers_helpers.py
mlsurv/results/_containers_printing.py
mlsurv/results/_explanation.py
mlsurv/results/_prediction.py
mlsurv/results/containers.py
mlsurv/results/printing.py
mlsurv/results/tables.py
mlsurv/tuning/__init__.py
mlsurv/tuning/base.py
mlsurv/tuning/exceptions.py
mlsurv/tuning/optuna_tuner.py
mlsurv/tuning/search_spaces.py
mlsurv/tuning/storage.py
mlsurv/tuning/studies.py
mlsurv/tuning/tuners/__init__.py
mlsurv/tuning/tuners/coxnet.py
mlsurv/tuning/tuners/coxph.py
mlsurv/tuning/tuners/custom.py
mlsurv/tuning/tuners/deephit.py
mlsurv/tuning/tuners/deepsurv.py
mlsurv/tuning/tuners/fssvm.py
mlsurv/tuning/tuners/gbsa.py
mlsurv/tuning/tuners/rsf.py
mlsurv/tuning/tuners/weibull_aft.py
mlsurv/tuning/tuners/xgbaft.py
mlsurv/tuning/tuners/xgbcox.py
mlsurv/viz/__init__.py
mlsurv/viz/_context.py
mlsurv/viz/_data.py
mlsurv/viz/_data_metrics.py
mlsurv/viz/_features_coefficients.py
mlsurv/viz/_features_correlation.py
mlsurv/viz/_features_hazard_ratios.py
mlsurv/viz/_features_helpers.py
mlsurv/viz/_features_importance.py
mlsurv/viz/_features_importance_multi.py
mlsurv/viz/_metrics_helpers.py
mlsurv/viz/_metrics_multi.py
mlsurv/viz/_metrics_renderers.py
mlsurv/viz/_metrics_roc.py
mlsurv/viz/_metrics_time.py
mlsurv/viz/_palettes.py
mlsurv/viz/_plot_impl.py
mlsurv/viz/_plot_impl_calibration.py
mlsurv/viz/_plot_impl_importance.py
mlsurv/viz/_plot_impl_metric.py
mlsurv/viz/_plot_impl_metric_time.py
mlsurv/viz/_plot_impl_roc.py
mlsurv/viz/_plot_impl_secondary.py
mlsurv/viz/_plot_impl_shared.py
mlsurv/viz/_plot_impl_survival.py
mlsurv/viz/_plotly_helpers.py
mlsurv/viz/_resolve.py
mlsurv/viz/_survival_figure.py
mlsurv/viz/_survival_helpers.py
mlsurv/viz/_survival_logrank.py
mlsurv/viz/_survival_maxstat.py
mlsurv/viz/_survival_renderers.py
mlsurv/viz/_theme.py
mlsurv/viz/_time_format.py
mlsurv/viz/_validation.py
mlsurv/viz/benchmarking_scatter.py
mlsurv/viz/calibration.py
mlsurv/viz/diagnostics.py
mlsurv/viz/distributions.py
mlsurv/viz/explain.py
mlsurv/viz/export.py
mlsurv/viz/features.py
mlsurv/viz/flowchart.py
mlsurv/viz/interactions.py
mlsurv/viz/metrics.py
mlsurv/viz/missing.py
mlsurv/viz/shap.py
mlsurv/viz/survival.py
mlsurv/viz/sweep.py
tests/test_add_eval_times.py
tests/test_base_subsection.py
tests/test_benchmark_scatter.py
tests/test_benchmarking.py
tests/test_benchmarking_roc_nan_refs.py
tests/test_bootstrap_coalesce_followup.py
tests/test_bootstrap_correctness.py
tests/test_cal_cache_thread_safety.py
tests/test_cal_precompute.py
tests/test_calibration_coalesce.py
tests/test_calibration_helpers.py
tests/test_calibration_labels.py
tests/test_calibration_metrics.py
tests/test_categorical_groups.py
tests/test_cli_calibrate.py
tests/test_cli_patient_report.py
tests/test_cli_plot.py
tests/test_coalesced_calibration_nan.py
tests/test_coalesced_incremental_nan.py
tests/test_config_persistence.py
tests/test_constants.py
tests/test_containers.py
tests/test_core_resolve.py
tests/test_covariance_selectors.py
tests/test_coxph_alpha_tuning.py
tests/test_ctd.py
tests/test_custom_model_tuning.py
tests/test_cv_training.py
tests/test_data_leakage.py
tests/test_demos.py
tests/test_dense_ibs.py
tests/test_device_param.py
tests/test_diagnostics_consolidation.py
tests/test_edge_cases.py
tests/test_encoding_warning.py
tests/test_epv_dedup.py
tests/test_eval_time_clipping.py
tests/test_eval_times_resolver.py
tests/test_evaluation_helpers.py
tests/test_explain.py
tests/test_export_results.py
tests/test_export_study.py
tests/test_feature_groups_report.py
tests/test_feature_importance_enhancements.py
tests/test_feature_summary.py
tests/test_filter_numeric_for_corr.py
tests/test_format_helpers.py
tests/test_format_helpers_import_discipline.py
tests/test_friendly_errors.py
tests/test_fssvm_validation.py
tests/test_get_metric_vignettes.py
tests/test_gnd_n_bins.py
tests/test_gnd_sample_size_coalesce.py
tests/test_guidance.py
tests/test_heavy_censoring_warning.py
tests/test_helpers_factory.py
tests/test_hr_dynamic_ticks.py
tests/test_hr_validity_gating.py
tests/test_import_discipline.py
tests/test_importance_method.py
tests/test_importance_test_invalidation.py
tests/test_inf_risk_scores.py
tests/test_integration.py
tests/test_interactions.py
tests/test_interactions_regression.py
tests/test_ipcw_support_flag.py
tests/test_ipcw_truncation_messaging.py
tests/test_iter_warn.py
tests/test_kwarg_forwarding.py
tests/test_learner_plot_wrappers.py
tests/test_learner_views.py
tests/test_lifecycle_integration.py
tests/test_lifelines_warning_filter.py
tests/test_limitations.py
tests/test_linearity_metrics.py
tests/test_list_model_selection.py
tests/test_logging_utils.py
tests/test_manuscript_renderer.py
tests/test_metric_param_unification.py
tests/test_metrics_roc_assembly.py
tests/test_missing_indicators.py
tests/test_missingness_leakage.py
tests/test_mixin_layout.py
tests/test_model_assumptions.py
tests/test_model_recommendations_property.py
tests/test_multi_model_low_coverage_coalesce.py
tests/test_multi_model_methods.py
tests/test_new_models.py
tests/test_njobs_audit.py
tests/test_paired_comparison.py
tests/test_paired_comparison_printing.py
tests/test_parallel.py
tests/test_parameter_sweep.py
tests/test_patient_report.py
tests/test_patient_resolve.py
tests/test_patient_select.py
tests/test_penalized_cox_selectors.py
tests/test_per_model_preprocessing.py
tests/test_permutation_importance_method.py
tests/test_persist_stat_tests.py
tests/test_ph_linearity_result_properties.py
tests/test_ph_test_overflow_suppression.py
tests/test_phase1_imports.py
tests/test_phase1_utils.py
tests/test_phase2_feature_selection.py
tests/test_phase2_models.py
tests/test_phase3_evaluation.py
tests/test_phase3_learner.py
tests/test_phase3_tuning.py
tests/test_phase4_cli.py
tests/test_phase4_tables.py
tests/test_phase4_viz.py
tests/test_pimp.py
tests/test_pipeline_unwrap.py
tests/test_plot_impl_stacklevels.py
tests/test_plot_models_best_sentinel.py
tests/test_plot_roc_nan_refs_followup.py
tests/test_plot_validation_heatmap.py
tests/test_plotly_helpers.py
tests/test_post_train_result_props.py
tests/test_prediction.py
tests/test_preprocessing_tuning.py
tests/test_preprocessing_utils.py
tests/test_printing.py
tests/test_printing_cv_order.py
tests/test_r_consumer_contract.py
tests/test_reference_overlap_warning_dedup.py
tests/test_report_dev.py
tests/test_report_environment_section.py
tests/test_report_eval_times.py
tests/test_report_exception_guards.py
tests/test_report_interpretation.py
tests/test_report_linearity_section.py
tests/test_report_pvalue_format.py
tests/test_report_references_section.py
tests/test_report_section_error_handling.py
tests/test_report_text_helpers.py
tests/test_reports.py
tests/test_reports_programmatic_access.py
tests/test_reproducibility.py
tests/test_resolve_model_results.py
tests/test_results_architecture.py
tests/test_roc_subsection.py
tests/test_run_model_params_n_trials_zero.py
tests/test_run_resume.py
tests/test_save_learner.py
tests/test_search_spaces.py
tests/test_sections_state_access_discipline.py
tests/test_setup_linearity_diagnostic.py
tests/test_setup_ph_diagnostic.py
tests/test_setup_small_subpop_warning.py
tests/test_setup_timeseries_order_warning.py
tests/test_shap_background.py
tests/test_shap_bool_dummy_masker.py
tests/test_shap_demotion.py
tests/test_shap_feature_names.py
tests/test_shap_method.py
tests/test_shared_utils.py
tests/test_show_ci_tristate.py
tests/test_silent_auc_nan_fallback.py
tests/test_small_sample_tuning_warning.py
tests/test_subpopulation_analysis.py
tests/test_subpopulation_labels.py
tests/test_summary_best_model_direction.py
tests/test_summary_extended_lines.py
tests/test_tables_extended.py
tests/test_train_calibrate.py
tests/test_train_metrics.py
tests/test_training_setup_hardening.py
tests/test_tuned_key_lifecycle.py
tests/test_tuner_classes.py
tests/test_tuning_contract.py
tests/test_tuning_enhancements.py
tests/test_validate_delta.py
tests/test_validate_references.py
tests/test_vignette_03_sksurv_targets.py
tests/test_vignette_smoke.py
tests/test_vignettes.py
tests/test_viz_adaptive_sizing.py
tests/test_viz_band_labels.py
tests/test_viz_context.py
tests/test_viz_diagnostics.py
tests/test_viz_distributions.py
tests/test_viz_export.py
tests/test_viz_feature_groups.py
tests/test_viz_importance.py
tests/test_viz_metrics_helpers.py
tests/test_viz_missing.py
tests/test_viz_palettes.py
tests/test_viz_resolver_tuned.py
tests/test_viz_return_data.py
tests/test_viz_return_data_lowlevel.py
tests/test_viz_roc.py
tests/test_viz_shap.py
tests/test_viz_subpop_facet.py
tests/test_warn_eval_times_failure.py
tests/test_warning_emission_followups.py
tests/test_warning_quality.py
tests/test_xgb_early_stopping.py
tests/test_xgbaft.py