MANIFEST.in
README.md
default_config.json
environment.yml
pyproject.toml
scripts/install_mdw_env.sh
scripts/mdw_gui.py
scripts/mdw_mmgbsa.py
scripts/mdw_next_replica.py
scripts/mdw_parse_mmgbsa.py
scripts/mdw_plot.py
scripts/mdw_report.py
scripts/mdw_run.py
scripts/mdw_self_check.py
scripts/run_mmgbsa_ambertools_template.sh
src/md_workbench/__init__.py
src/md_workbench/cli.py
src/md_workbench/report.py
src/md_workbench/self_check.py
src/md_workbench/analysis/__init__.py
src/md_workbench/analysis/imaging.py
src/md_workbench/analysis/advanced/__init__.py
src/md_workbench/analysis/advanced/features.py
src/md_workbench/analysis/advanced/msm.py
src/md_workbench/analysis/advanced/projection.py
src/md_workbench/analysis/advanced/workflow.py
src/md_workbench/analysis/basic/__init__.py
src/md_workbench/analysis/basic/combine.py
src/md_workbench/analysis/basic/contacts.py
src/md_workbench/analysis/basic/extended.py
src/md_workbench/analysis/basic/hbonds.py
src/md_workbench/analysis/basic/logs.py
src/md_workbench/analysis/basic/replica.py
src/md_workbench/analysis/basic/rms.py
src/md_workbench/analysis/basic/salt_bridges.py
src/md_workbench/analysis/basic/workflow.py
src/md_workbench/analysis/waterbridge/__init__.py
src/md_workbench/analysis/waterbridge/geometry.py
src/md_workbench/analysis/waterbridge/replica.py
src/md_workbench/analysis/waterbridge/workflow.py
src/md_workbench/config/__init__.py
src/md_workbench/config/io.py
src/md_workbench/config/models.py
src/md_workbench/config/plot_style_defaults.py
src/md_workbench/core/__init__.py
src/md_workbench/core/executables.py
src/md_workbench/core/figure_clusters.py
src/md_workbench/core/files.py
src/md_workbench/core/labels.py
src/md_workbench/core/metrics.py
src/md_workbench/core/organize.py
src/md_workbench/core/pathing.py
src/md_workbench/core/progress.py
src/md_workbench/core/projects.py
src/md_workbench/core/replicas.py
src/md_workbench/core/runlog.py
src/md_workbench/core/validation.py
src/md_workbench/docking/__init__.py
src/md_workbench/docking/workflow.py
src/md_workbench/gui/__init__.py
src/md_workbench/gui/app.py
src/md_workbench/gui/forms.py
src/md_workbench/gui/i18n.py
src/md_workbench/plotting/__init__.py
src/md_workbench/plotting/advanced.py
src/md_workbench/plotting/bars.py
src/md_workbench/plotting/basic_combined.py
src/md_workbench/plotting/basic_replica.py
src/md_workbench/plotting/heatmaps.py
src/md_workbench/plotting/mmgbsa.py
src/md_workbench/plotting/residue_labels.py
src/md_workbench/plotting/series.py
src/md_workbench/plotting/snapshots.py
src/md_workbench/plotting/theme.py
src/md_workbench/plotting/waterbridge.py
src/md_workbench/postprocess/mmgbsa/__init__.py
src/md_workbench/postprocess/mmgbsa/parser.py
src/md_workbench/postprocess/mmgbsa/workflow.py
src/md_workbench/prep/__init__.py
src/md_workbench/prep/ligand.py
src/md_workbench/prep/receptor.py
src/md_workbench/prep/workflow.py
src/md_workbench/simulate/__init__.py
src/md_workbench/simulate/runner.py
src/md_workbench/simulate/system_builder.py
src/md_workbench/workflows/__init__.py
src/md_workbench/workflows/existing_results.py
src/md_workbench/workflows/md.py
src/md_workbench/workflows/plot.py
src/mdw_zhong.egg-info/PKG-INFO
src/mdw_zhong.egg-info/SOURCES.txt
src/mdw_zhong.egg-info/dependency_links.txt
src/mdw_zhong.egg-info/entry_points.txt
src/mdw_zhong.egg-info/requires.txt
src/mdw_zhong.egg-info/top_level.txt