numpy>=1.26
pandas>=2.0
pyarrow>=14.0
PyYAML>=6.0
rich>=13.0
litellm>=1.40
sentence-transformers>=2.2
prompt-toolkit>=3

[admet]
admet-ai

[all]
dargus-cli[admet,analysis,dev,docking,genetics,literature,llm,modeling,singlecell]

[analysis]
scipy>=1.11
scikit-learn>=1.3
statsmodels>=0.14
matplotlib>=3.7
seaborn>=0.12

[dev]
pytest>=7.4
pytest-asyncio>=0.21
black>=23.0
ruff>=0.1.0
mypy>=1.6

[docking]
vina>=1.2
rdkit>=2023.9.1

[genetics]
coloc
ldsc

[literature]
PyMuPDF>=1.23
biopython>=1.81

[llm]
httpx>=0.27

[modeling]
pymc>=5.10
pytensor>=2.18

[singlecell]
scanpy>=1.9
scvi-tools>=1.0
