LICENSE.txt
README.md
pyproject.toml
setup.cfg
setup.py
src/raft/__init__.py
src/raft/__main__.py
src/raft/_commit.py
src/raft/changelog.py
src/raft/clean.py
src/raft/clean_work_files.sh
src/raft/cli.py
src/raft/core.py
src/raft/diagnostics.py
src/raft/download_utils.py
src/raft/manifest.py
src/raft/modules.py
src/raft/ots.py
src/raft/project.py
src/raft/status.py
src/raft/utils.py
src/raft/workflow.py
src/raft/ui/__init__.py
src/raft/ui/browser.py
src/raft/ui/demo_data.py
src/raft/ui/nf_config.py
src/raft/ui/qc_parsers.py
src/raft/ui/reports.py
src/raft/ui/server.py
src/raft/ui/session.py
src/raft/ui/specs.py
src/raft/ui/static/cloud-launcher.html
src/raft/ui/static/config-generator.html
src/raft/ui/static/container_mappings.yaml
src/raft/ui/static/manifest-generator.html
src/raft/ui/static/raft-cloud-launcher.html
src/raft/ui/static/raft-config-generator.html
src/raft/ui/static/raft-manifest-generator.html
src/raft/ui/static/raft-viewer-standalone.html
src/raft/ui/static/raft-viewer.html
src/raft/ui/static/schemas/manifest-ui.schema.json
src/raft/ui/static/schemas/report-ui.schema.json
src/raft/ui/static/schemas/workflow-config.schema.json
src/raft/ui/static/schemas/workflow-definition.schema.json
src/raft/ui/static/schemas/workflow-status.schema.json
src/raft/ui/static/templates/default.manifest-ui.json
src/raft/ui/static/templates/default.report-ui.json
src/raft/ui/static/templates/lens.report-ui.json
src/raft/ui/static/vendor/babel.min.js
src/raft/ui/static/vendor/d3.min.js
src/raft/ui/static/vendor/html2pdf.bundle.min.js
src/raft/ui/static/vendor/jspdf.umd.min.js
src/raft/ui/static/vendor/lucide.min.js
src/raft/ui/static/vendor/pako.min.js
src/raft/ui/static/vendor/pdf.min.js
src/raft/ui/static/vendor/pdf.worker.min.js
src/raft/ui/static/vendor/react-dom.production.min.js
src/raft/ui/static/vendor/react.production.min.js
src/raft/ui/static/vendor/tailwind.min.js
src/raft/ui/static/workflows/index.json
src/raft/ui/static/workflows/lens/lens-v1.9-dev.config
src/raft/ui/static/workflows/lens/lens-v1.9-dev.stringent.config
src/raft/ui/static/workflows/lens/lens.human.fastqs.manifest-ui.json
src/raft/ui/static/workflows/lens/lens.human.fastqs.report-ui.json
src/raft/ui/static/workflows/lens/lens.human.fastqs.status.json
src/raft/ui/static/workflows/lens/qc-metrics.json
src/reproducible_analyses_framework_and_tools.egg-info/PKG-INFO
src/reproducible_analyses_framework_and_tools.egg-info/SOURCES.txt
src/reproducible_analyses_framework_and_tools.egg-info/dependency_links.txt
src/reproducible_analyses_framework_and_tools.egg-info/entry_points.txt
src/reproducible_analyses_framework_and_tools.egg-info/requires.txt
src/reproducible_analyses_framework_and_tools.egg-info/top_level.txt
tests/test_changelog.py
tests/test_clean.py
tests/test_control_plane_and_ots.py
tests/test_diagnostics.py
tests/test_download_utils.py
tests/test_raft.py
tests/test_raft_additional_thorough.py
tests/test_ui_server_assets.py
tests/test_workflow_agnostic.py