LICENSE.md
MANIFEST.in
README.rst
pyproject.toml
cellarium/ml/__init__.py
cellarium/ml/cli.py
cellarium/ml/py.typed
cellarium/ml/callbacks/__init__.py
cellarium/ml/callbacks/cellarium_gpt_accuracy.py
cellarium/ml/callbacks/cellarium_gpt_generate.py
cellarium/ml/callbacks/cellarium_gpt_mb.py
cellarium/ml/callbacks/cellarium_gpt_mb_mean_gene_expression.py
cellarium/ml/callbacks/cellarium_gpt_prompt_size.py
cellarium/ml/callbacks/compute_norm.py
cellarium/ml/callbacks/get_coord_data.py
cellarium/ml/callbacks/loss_scale_monitor.py
cellarium/ml/callbacks/prediction_writer.py
cellarium/ml/callbacks/variance_monitor.py
cellarium/ml/core/__init__.py
cellarium/ml/core/datamodule.py
cellarium/ml/core/module.py
cellarium/ml/core/pipeline.py
cellarium/ml/data/__init__.py
cellarium/ml/data/dadc_dataset.py
cellarium/ml/data/distributed_anndata.py
cellarium/ml/data/fileio.py
cellarium/ml/data/pytree_dataset.py
cellarium/ml/data/schema.py
cellarium/ml/distributions/__init__.py
cellarium/ml/distributions/negative_binomial.py
cellarium/ml/layers/__init__.py
cellarium/ml/layers/attention.py
cellarium/ml/layers/embedding.py
cellarium/ml/layers/ffn.py
cellarium/ml/layers/head.py
cellarium/ml/layers/mu_linear.py
cellarium/ml/layers/normadd.py
cellarium/ml/layers/transformer.py
cellarium/ml/losses/__init__.py
cellarium/ml/losses/nt_xent.py
cellarium/ml/lr_schedulers/__init__.py
cellarium/ml/lr_schedulers/linear_lr.py
cellarium/ml/models/__init__.py
cellarium/ml/models/cellarium_gpt.py
cellarium/ml/models/contrastive_mlp.py
cellarium/ml/models/geneformer.py
cellarium/ml/models/hvg_seurat_v3.py
cellarium/ml/models/incremental_pca.py
cellarium/ml/models/logistic_regression.py
cellarium/ml/models/model.py
cellarium/ml/models/onepass_mean_var_std.py
cellarium/ml/models/probabilistic_pca.py
cellarium/ml/models/tdigest.py
cellarium/ml/preprocessing/__init__.py
cellarium/ml/preprocessing/highly_variable_genes.py
cellarium/ml/transforms/__init__.py
cellarium/ml/transforms/binomial_resample.py
cellarium/ml/transforms/cellarium_gpt_tokenizer.py
cellarium/ml/transforms/divide_by_scale.py
cellarium/ml/transforms/dropout.py
cellarium/ml/transforms/duplicate.py
cellarium/ml/transforms/filter.py
cellarium/ml/transforms/gaussian_noise.py
cellarium/ml/transforms/log1p.py
cellarium/ml/transforms/normalize_total.py
cellarium/ml/transforms/randomize.py
cellarium/ml/transforms/z_score.py
cellarium/ml/utilities/__init__.py
cellarium/ml/utilities/core.py
cellarium/ml/utilities/data.py
cellarium/ml/utilities/distributed.py
cellarium/ml/utilities/layers.py
cellarium/ml/utilities/mup.py
cellarium/ml/utilities/testing.py
cellarium_ml.egg-info/PKG-INFO
cellarium_ml.egg-info/SOURCES.txt
cellarium_ml.egg-info/dependency_links.txt
cellarium_ml.egg-info/entry_points.txt
cellarium_ml.egg-info/requires.txt
cellarium_ml.egg-info/top_level.txt
tests/test_attention.py
tests/test_callbacks.py
tests/test_cellarium_gpt.py
tests/test_cli.py
tests/test_contrastive_mlp.py
tests/test_geneformer.py
tests/test_highly_variable_genes.py
tests/test_hvg_seurat_v3.py
tests/test_ipca.py
tests/test_logistic_regression.py
tests/test_mup.py
tests/test_onepass_mean_var_std.py
tests/test_ppca.py
tests/test_tdigest.py
tests/test_transforms.py