LICENSE
MANIFEST.in
README.md
docs.sh
mkdocs.yml
pyproject.toml
docs/ensembl-platform.md
docs/getting-started.md
docs/index.md
docs/dev/contributing.md
docs/dev/documentation-style.md
docs/dev/releasing.md
docs/guides/aliases.md
docs/guides/assembly-selection.md
docs/guides/cache.md
docs/guides/custom-genomes.md
docs/guides/features.md
docs/guides/reference-dna.md
docs/guides/transcripts.md
docs/reference/aliases.md
docs/reference/cli.md
docs/reference/data.md
docs/reference/datasets.md
docs/reference/features.md
docs/reference/genome.md
docs/reference/helpers.md
docs/reference/index.md
docs/stylesheets/docs.css
pyensembl/__init__.py
pyensembl/common.py
pyensembl/database.py
pyensembl/dated_releases.py
pyensembl/download_cache.py
pyensembl/ensembl_annotation.py
pyensembl/ensembl_release.py
pyensembl/ensembl_url_templates.py
pyensembl/ensembl_versions.py
pyensembl/exon.py
pyensembl/fasta.py
pyensembl/gene.py
pyensembl/gene_name_aliases.py
pyensembl/genome.py
pyensembl/genome_fasta.py
pyensembl/genome_fasta_cache.py
pyensembl/locus.py
pyensembl/locus_with_genome.py
pyensembl/normalization.py
pyensembl/protein.py
pyensembl/reference_name.py
pyensembl/search.py
pyensembl/sequence_data.py
pyensembl/shell.py
pyensembl/species.py
pyensembl/transcript.py
pyensembl/version.py
pyensembl/versioned_ids.py
pyensembl.egg-info/PKG-INFO
pyensembl.egg-info/SOURCES.txt
pyensembl.egg-info/dependency_links.txt
pyensembl.egg-info/entry_points.txt
pyensembl.egg-info/requires.txt
pyensembl.egg-info/top_level.txt
scripts/benchmark_gtf_indexing.py
scripts/check_docs_examples.py
scripts/check_docs_links.py
tests/test_biotype_filter.py
tests/test_cache_lifecycle.py
tests/test_cache_process_locking.py
tests/test_cache_root.py
tests/test_cli_deletion.py
tests/test_cli_output.py
tests/test_cli_reference_selection.py
tests/test_contigs.py
tests/test_data_management.py
tests/test_database_cache_dir.py
tests/test_dated_release_discovery.py
tests/test_dated_releases.py
tests/test_dna_resume.py
tests/test_download_cache.py
tests/test_ensembl_annotation.py
tests/test_ensembl_genomes_species.py
tests/test_ensembl_gtf.py
tests/test_ensembl_object_properties.py
tests/test_equality.py
tests/test_exon_id.py
tests/test_exon_object.py
tests/test_extended_protein_coding.py
tests/test_fasta_versions.py
tests/test_fixture_cache.py
tests/test_gencode_biotype_aliases.py
tests/test_gene_ids.py
tests/test_gene_name_aliases.py
tests/test_gene_names.py
tests/test_gene_objects.py
tests/test_genome_fasta.py
tests/test_genome_fasta_cache.py
tests/test_gtf_dataframe.py
tests/test_id_length.py
tests/test_installed.py
tests/test_lazy_locus_database.py
tests/test_locus.py
tests/test_merged_gene_intervals.py
tests/test_missing_genome_sources.py
tests/test_mouse.py
tests/test_nearest_feature.py
tests/test_progress.py
tests/test_release_versions.py
tests/test_scaffold_genes.py
tests/test_search.py
tests/test_sequence_data.py
tests/test_serialization.py
tests/test_shell.py
tests/test_species_assemblies.py
tests/test_string_representation.py
tests/test_tair10_complete.py
tests/test_timings.py
tests/test_transcript_ids.py
tests/test_transcript_objects.py
tests/test_transcript_sequences.py
tests/test_transcript_support_level.py
tests/test_truncated_stop_codon.py
tests/test_ucsc_gtf.py
tests/test_versioned_ids.py
tests/test_versioned_protein_fasta.py
tests/test_versions.py