[console_scripts]
analyze_cnv_breakpoint_reads = ugbio_cnv.analyze_cnv_breakpoint_reads:main
annotate_FREEC_segments = ugbio_cnv.annotate_FREEC_segments:main
annotate_vcf_with_regions = ugbio_cnv.combine_cnmops_cnvpytor_cnv_calls:main_annotate_regions
bicseq2_post_processing = ugbio_cnv.bicseq2_post_processing:main
combine_cnmops_cnvpytor_cnv_calls = ugbio_cnv.combine_cnmops_cnvpytor_cnv_calls:main
combine_cnv_vcfs = ugbio_cnv.combine_cnmops_cnvpytor_cnv_calls:main_concat
filter_dup_cnmmops_cnv_calls = ugbio_cnv.combine_cnmops_cnvpytor_cnv_calls:main_filter_dup_cnmmops
filter_sample_cnvs = ugbio_cnv.filter_sample_cnvs:main
plot_FREEC_neutral_AF = ugbio_cnv.plot_FREEC_neutral_AF:main
plot_cnv_results = ugbio_cnv.plot_cnv_results:main
process_cnmops_cnvs = ugbio_cnv.process_cnmops_cnvs:main
run_cnvpytor = ugbio_cnv.run_cnvpytor:main
run_tests = pytest:main
