anndata>=0.13.3
certifi>=2025.1.31
cryptography>=42
dask>=2026.8.0
igraph>=1.0.0
joblib>=1.6.0
leidenalg>=0.12.0
matplotlib>=3.11.1
numba>=0.67.0
numpy>=2.5.2
pandas>=3.0.5
plotly>=7.0.0
platformdirs>=4.3.0
polars>=1.44.1
psutil>=7.0.0
py-machineid>=0.8.0
pyarrow>=25.0.1
pyyaml>=6.0.3
requests>=2.32.0
scikit-learn>=1.9.0
scipy>=1.18.1
spatialdata>=0.8.0
threadpoolctl>=3.6.0
tifffile>=2026.8.23
tqdm>=4.70.0
umap-learn>=0.5.12
zarr>=3.3.0

[ai]
mcp<3,>=2.2

[de]
pydeseq2>=0.5

[interactive]
anywidget>=0.9
ipywidgets>=8.1

[roi]
shapely>=2.1.2
