CHANGELOG.md
LICENSE
MANIFEST.in
NOTICE.md
README.md
pyproject.toml
data-raw/README.md
data-raw/build_dictionary.py
data-raw/build_drug_vocabulary.py
data-raw/build_metastasis_sites.py
data-raw/build_releases.py
examples/crc_liver_metastasis.ipynb
examples/synthetic_cohorts.py
scripts/check_vocabulary.py
src/geniekit/__init__.py
src/geniekit/_version.py
src/geniekit/cli.py
src/geniekit/dictionary.py
src/geniekit/releases.py
src/geniekit.egg-info/PKG-INFO
src/geniekit.egg-info/SOURCES.txt
src/geniekit.egg-info/dependency_links.txt
src/geniekit.egg-info/entry_points.txt
src/geniekit.egg-info/requires.txt
src/geniekit.egg-info/top_level.txt
src/geniekit/aggregate/__init__.py
src/geniekit/aggregate/cohort.py
src/geniekit/aggregate/crc.py
src/geniekit/aggregate/disclosure.py
src/geniekit/aggregate/genomics.py
src/geniekit/aggregate/stats.py
src/geniekit/aggregate/summaries.py
src/geniekit/harmonize/__init__.py
src/geniekit/harmonize/crosswalk.py
src/geniekit/harmonize/derive.py
src/geniekit/harmonize/engine.py
src/geniekit/harmonize/genomic.py
src/geniekit/harmonize/report.py
src/geniekit/io/__init__.py
src/geniekit/io/cohort.py
src/geniekit/io/local.py
src/geniekit/io/synapse.py
src/geniekit/lot/__init__.py
src/geniekit/lot/engine.py
src/geniekit/lot/index.py
src/geniekit/lot/regimens.py
src/geniekit/lot/rules.py
src/geniekit/lot/vocabulary.py
src/geniekit/resources/__init__.py
src/geniekit/resources/crosswalk.yaml
src/geniekit/resources/dictionary.csv.gz
src/geniekit/resources/dictionary.meta.json
src/geniekit/resources/drug_vocabulary.csv
src/geniekit/resources/released_columns.json
src/geniekit/resources/releases.json
src/geniekit/synthetic/__init__.py
src/geniekit/synthetic/generate.py
src/geniekit/synthetic/spec.py
tests/__init__.py
tests/conftest.py
tests/test_aggregate.py
tests/test_cli.py
tests/test_dictionary.py
tests/test_harmonize.py
tests/test_io_local.py
tests/test_io_synapse.py
tests/test_lot.py
tests/test_releases.py
tests/test_synthetic.py
tests/fixtures/README.md
tests/fixtures/nsclc_sim/cBioPortal_files/data_CNA.txt.gz
tests/fixtures/nsclc_sim/cBioPortal_files/data_fusions.txt.gz
tests/fixtures/nsclc_sim/cBioPortal_files/data_mutations_extended.txt.gz
tests/fixtures/nsclc_sim/clinical_data/cancer_level_dataset_index.csv.gz
tests/fixtures/nsclc_sim/clinical_data/cancer_level_dataset_non_index.csv.gz
tests/fixtures/nsclc_sim/clinical_data/cancer_panel_test_level_dataset.csv.gz
tests/fixtures/nsclc_sim/clinical_data/imaging_level_dataset.csv.gz
tests/fixtures/nsclc_sim/clinical_data/med_onc_note_level_dataset.csv.gz
tests/fixtures/nsclc_sim/clinical_data/pathology_report_level_dataset.csv.gz
tests/fixtures/nsclc_sim/clinical_data/patient_level_dataset.csv.gz
tests/fixtures/nsclc_sim/clinical_data/regimen_cancer_level_dataset.csv.gz