DAY-EC activated.
DAY-EC activated.
__PATHS_START__
remote_root=/fsx/analysis_results/ubuntu/bcl25b_l003_shard016_20260602T000733Z/daylily-omics-analysis
bcl_dir=/fsx/analysis_results/ubuntu/bcl25b_l003_shard016_20260602T000733Z/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert
/fsx/analysis_results/ubuntu/bcl25b_l003_shard016_20260602T000733Z/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert
/fsx/analysis_results/ubuntu/bcl25b_l003_shard016_20260602T000733Z/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/benchmarks
/fsx/analysis_results/ubuntu/bcl25b_l003_shard016_20260602T000733Z/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs
/fsx/analysis_results/ubuntu/bcl25b_l003_shard016_20260602T000733Z/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L003
/fsx/analysis_results/ubuntu/bcl25b_l003_shard016_20260602T000733Z/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports
/fsx/analysis_results/ubuntu/bcl25b_l003_shard016_20260602T000733Z/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L003
/fsx/analysis_results/ubuntu/bcl25b_l003_shard016_20260602T000733Z/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/logs
/fsx/analysis_results/ubuntu/bcl25b_l003_shard016_20260602T000733Z/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tables
/fsx/analysis_results/ubuntu/bcl25b_l003_shard016_20260602T000733Z/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_fastqs
/fsx/analysis_results/ubuntu/bcl25b_l003_shard016_20260602T000733Z/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_fastqs/L003
/fsx/analysis_results/ubuntu/bcl25b_l003_shard016_20260602T000733Z/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_reports
/fsx/analysis_results/ubuntu/bcl25b_l003_shard016_20260602T000733Z/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_reports/L003
__PATHS_END__
__BENCHMARKS_START__
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741.8615	0:12:21	27.00	47.27	23.71	23.88	450802.98	450752.72	75.69	561.73	i192mem-dy-all-1	10.0.1.108	192	0.7572	m7i.metal-48xl	us-west-2d	3.163300	1	0.003395
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s	h:m:s	max_rss	max_vms	max_uss	max_pss	io_in	io_out	mean_load	cpu_time	hostname	ip	nproc	cpu_efficiency	instance_type	region_az	spot_cost	snakemake_threads	task_cost
671.1080	0:11:11	79838.67	102077.19	79861.35	79866.01	36088.98	0.18	268.51	1802.03	i192mem-dy-all-1	10.0.1.108	192	2.6852	m7i.metal-48xl	us-west-2d	3.163300	48	0.147425
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s	h:m:s	max_rss	max_vms	max_uss	max_pss	io_in	io_out	mean_load	cpu_time	hostname	ip	nproc	cpu_efficiency	instance_type	region_az	spot_cost	snakemake_threads	task_cost
727.2641	0:12:07	53620.16	73550.50	53640.39	53648.92	35897.11	0.18	249.30	1813.07	i192mem-dy-all-3	10.0.1.82	192	2.4930	m7i.metal-48xl	us-west-2d	3.163300	48	0.159761
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s	h:m:s	max_rss	max_vms	max_uss	max_pss	io_in	io_out	mean_load	cpu_time	hostname	ip	nproc	cpu_efficiency	instance_type	region_az	spot_cost	snakemake_threads	task_cost
617.0856	0:10:17	54512.51	76296.07	54532.84	54537.53	35736.48	0.18	298.49	1842.27	i192mem-dy-all-2	10.0.1.80	192	2.9854	m7i.metal-48xl	us-west-2d	3.163300	48	0.135557
__BENCH_FILE__ /fsx/analysis_results/ubuntu/bcl25b_l003_shard016_20260602T000733Z/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/benchmarks/run_bclconvert.L003.0004_tiles0148-0196.bench.tsv
s	h:m:s	max_rss	max_vms	max_uss	max_pss	io_in	io_out	mean_load	cpu_time	hostname	ip	nproc	cpu_efficiency	instance_type	region_az	spot_cost	snakemake_threads	task_cost
703.8704	0:11:43	62176.37	76674.39	62192.57	62197.27	32001.89	0.18	255.62	1799.43	i192mem-dy-all-4	10.0.1.146	192	2.5565	m7i.metal-48xl	us-west-2d	3.163300	48	0.154622
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s	h:m:s	max_rss	max_vms	max_uss	max_pss	io_in	io_out	mean_load	cpu_time	hostname	ip	nproc	cpu_efficiency	instance_type	region_az	spot_cost	snakemake_threads	task_cost
708.1115	0:11:48	54331.25	71783.31	54341.18	54349.96	38204.13	0.18	249.53	1767.21	i192mem-dy-all-2	10.0.1.80	192	2.4957	m7i.metal-48xl	us-west-2d	3.163300	48	0.155553
__BENCH_FILE__ /fsx/analysis_results/ubuntu/bcl25b_l003_shard016_20260602T000733Z/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/benchmarks/run_bclconvert.L003.0006_tiles0246-0294.bench.tsv
s	h:m:s	max_rss	max_vms	max_uss	max_pss	io_in	io_out	mean_load	cpu_time	hostname	ip	nproc	cpu_efficiency	instance_type	region_az	spot_cost	snakemake_threads	task_cost
712.8252	0:11:52	67401.55	86657.34	67418.07	67422.74	33879.29	0.18	262.98	1874.60	i192mem-dy-all-4	10.0.1.146	192	2.6298	m7i.metal-48xl	us-west-2d	3.163300	48	0.156589
__BENCH_FILE__ /fsx/analysis_results/ubuntu/bcl25b_l003_shard016_20260602T000733Z/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/benchmarks/run_bclconvert.L003.0007_tiles0295-0343.bench.tsv
s	h:m:s	max_rss	max_vms	max_uss	max_pss	io_in	io_out	mean_load	cpu_time	hostname	ip	nproc	cpu_efficiency	instance_type	region_az	spot_cost	snakemake_threads	task_cost
696.2872	0:11:36	61874.56	78025.22	61893.12	61897.80	36158.09	0.18	262.96	1831.31	i192mem-dy-all-3	10.0.1.82	192	2.6301	m7i.metal-48xl	us-west-2d	3.163300	48	0.152956
__BENCH_FILE__ /fsx/analysis_results/ubuntu/bcl25b_l003_shard016_20260602T000733Z/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/benchmarks/run_bclconvert.L003.0008_tiles0344-0392.bench.tsv
s	h:m:s	max_rss	max_vms	max_uss	max_pss	io_in	io_out	mean_load	cpu_time	hostname	ip	nproc	cpu_efficiency	instance_type	region_az	spot_cost	snakemake_threads	task_cost
633.9476	0:10:33	81911.66	100297.68	81927.85	81932.49	25184.37	0.18	290.19	1839.69	i192mem-dy-all-1	10.0.1.108	192	2.9020	m7i.metal-48xl	us-west-2d	3.163300	48	0.139262
__BENCH_FILE__ /fsx/analysis_results/ubuntu/bcl25b_l003_shard016_20260602T000733Z/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/benchmarks/run_bclconvert.L003.0009_tiles0393-0441.bench.tsv
s	h:m:s	max_rss	max_vms	max_uss	max_pss	io_in	io_out	mean_load	cpu_time	hostname	ip	nproc	cpu_efficiency	instance_type	region_az	spot_cost	snakemake_threads	task_cost
724.6769	0:12:04	88020.20	126236.80	88039.30	88045.12	31644.95	0.18	246.19	1784.31	i192mem-dy-all-1	10.0.1.108	192	2.4622	m7i.metal-48xl	us-west-2d	3.163300	48	0.159192
__BENCH_FILE__ /fsx/analysis_results/ubuntu/bcl25b_l003_shard016_20260602T000733Z/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/benchmarks/run_bclconvert.L003.0010_tiles0442-0490.bench.tsv
s	h:m:s	max_rss	max_vms	max_uss	max_pss	io_in	io_out	mean_load	cpu_time	hostname	ip	nproc	cpu_efficiency	instance_type	region_az	spot_cost	snakemake_threads	task_cost
526.5175	0:08:46	70542.78	95509.65	70558.58	70563.07	31007.64	0.18	356.97	1879.50	i192mem-dy-all-1	10.0.1.108	192	3.5697	m7i.metal-48xl	us-west-2d	3.163300	48	0.115662
__BENCH_FILE__ /fsx/analysis_results/ubuntu/bcl25b_l003_shard016_20260602T000733Z/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/benchmarks/run_bclconvert.L003.0011_tiles0491-0539.bench.tsv
s	h:m:s	max_rss	max_vms	max_uss	max_pss	io_in	io_out	mean_load	cpu_time	hostname	ip	nproc	cpu_efficiency	instance_type	region_az	spot_cost	snakemake_threads	task_cost
704.3387	0:11:44	68623.59	98536.85	68630.13	68634.87	32168.36	0.19	247.49	1743.48	i192mem-dy-all-4	10.0.1.146	192	2.4753	m7i.metal-48xl	us-west-2d	3.163300	48	0.154725
__BENCH_FILE__ /fsx/analysis_results/ubuntu/bcl25b_l003_shard016_20260602T000733Z/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/benchmarks/run_bclconvert.L003.0012_tiles0540-0588.bench.tsv
s	h:m:s	max_rss	max_vms	max_uss	max_pss	io_in	io_out	mean_load	cpu_time	hostname	ip	nproc	cpu_efficiency	instance_type	region_az	spot_cost	snakemake_threads	task_cost
592.4557	0:09:52	76738.45	95669.51	76685.81	76690.43	33818.20	33.12	310.99	1842.89	i192mem-dy-all-3	10.0.1.82	192	3.1106	m7i.metal-48xl	us-west-2d	3.163300	48	0.130147
__BENCH_FILE__ /fsx/analysis_results/ubuntu/bcl25b_l003_shard016_20260602T000733Z/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/benchmarks/run_bclconvert.L003.0013_tiles0589-0637.bench.tsv
s	h:m:s	max_rss	max_vms	max_uss	max_pss	io_in	io_out	mean_load	cpu_time	hostname	ip	nproc	cpu_efficiency	instance_type	region_az	spot_cost	snakemake_threads	task_cost
667.3291	0:11:07	85294.35	115649.80	85311.09	85317.19	32598.77	0.18	274.91	1834.56	i192mem-dy-all-2	10.0.1.80	192	2.7491	m7i.metal-48xl	us-west-2d	3.163300	48	0.146595
__BENCH_FILE__ /fsx/analysis_results/ubuntu/bcl25b_l003_shard016_20260602T000733Z/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/benchmarks/run_bclconvert.L003.0014_tiles0638-0686.bench.tsv
s	h:m:s	max_rss	max_vms	max_uss	max_pss	io_in	io_out	mean_load	cpu_time	hostname	ip	nproc	cpu_efficiency	instance_type	region_az	spot_cost	snakemake_threads	task_cost
471.0788	0:07:51	59386.24	81959.64	59396.42	59401.12	31690.15	0.18	400.17	1885.56	i192mem-dy-all-2	10.0.1.80	192	4.0026	m7i.metal-48xl	us-west-2d	3.163300	48	0.103484
__BENCH_FILE__ /fsx/analysis_results/ubuntu/bcl25b_l003_shard016_20260602T000733Z/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/benchmarks/run_bclconvert.L003.0015_tiles0687-0735.bench.tsv
s	h:m:s	max_rss	max_vms	max_uss	max_pss	io_in	io_out	mean_load	cpu_time	hostname	ip	nproc	cpu_efficiency	instance_type	region_az	spot_cost	snakemake_threads	task_cost
703.7520	0:11:43	91826.21	142340.77	91845.39	91849.97	33363.95	0.18	257.32	1811.26	i192mem-dy-all-4	10.0.1.146	192	2.5737	m7i.metal-48xl	us-west-2d	3.163300	48	0.154596
__BENCH_FILE__ /fsx/analysis_results/ubuntu/bcl25b_l003_shard016_20260602T000733Z/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/benchmarks/run_bclconvert.L003.0016_tiles0736-0784.bench.tsv
s	h:m:s	max_rss	max_vms	max_uss	max_pss	io_in	io_out	mean_load	cpu_time	hostname	ip	nproc	cpu_efficiency	instance_type	region_az	spot_cost	snakemake_threads	task_cost
540.4123	0:09:00	77802.14	96263.16	77826.78	77831.47	25503.85	0.18	341.13	1843.91	i192mem-dy-all-3	10.0.1.82	192	3.4120	m7i.metal-48xl	us-west-2d	3.163300	48	0.118714
__BENCH_FILE__ /fsx/analysis_results/ubuntu/bcl25b_l003_shard016_20260602T000733Z/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/benchmarks/run_bclconvert.lane_fastqs_ready.bench.tsv
s	h:m:s	max_rss	max_vms	max_uss	max_pss	io_in	io_out	mean_load	cpu_time	hostname	ip	nproc	cpu_efficiency	instance_type	region_az	spot_cost	snakemake_threads	task_cost
0.0163	0:00:00	3.25	7.80	0.34	0.49	0.00	0.00	0.00	0.00	ip-10-0-0-225	54.148.239.185	32	0.0000	r7i.8xlarge	us-west-2d	0.946700	1	0.000000
__BENCHMARKS_END__
__LOG_EXTRACTS_START__
__LOG_FILE__ /fsx/analysis_results/ubuntu/bcl25b_l003_shard016_20260602T000733Z/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/logs/run_bclconvert.L003.0001_tiles0001-0049.log
bcl-convert Version 00.000.000.4.0.3
bcl-convert command: singularity exec --bind /fsx:/fsx docker://nfcore/bclconvert:4.0.3 bcl-convert --bcl-input-directory /fsx/analysis_results/ubuntu/bcl25b_l003_shard016_20260602T000733Z/daylily-omics-analysis/config/run_dir_links/20260514_LH01106_0009_B23TVLGLT4 --output-directory results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_fastqs/L003/0001_tiles0001-0049 --sample-sheet results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_reports/L003/0001_tiles0001-0049/SampleSheet.csv --strict-mode false --first-tile-only false --bcl-sampleproject-subdirectories false --fastq-gzip-compression-level 1 --bcl-num-parallel-tiles 8 --bcl-num-conversion-threads 2 --bcl-num-compression-threads 24 --bcl-num-decompression-threads 8 --shared-thread-odirect-output true --output-legacy-stats true --num-unknown-barcodes-reported 1000 --tiles s_3_1101+s_3_1102+s_3_1103+s_3_1104+s_3_1105+s_3_1106+s_3_1107+s_3_1108+s_3_1109+s_3_1110+s_3_1111+s_3_1112+s_3_1113+s_3_1114+s_3_1115+s_3_1116+s_3_1117+s_3_1118+s_3_1119+s_3_1120+s_3_1121+s_3_1122+s_3_1123+s_3_1124+s_3_1125+s_3_1126+s_3_1127+s_3_1128+s_3_1129+s_3_1130+s_3_1131+s_3_1132+s_3_1133+s_3_1134+s_3_1135+s_3_1136+s_3_1137+s_3_1138+s_3_1139+s_3_1140+s_3_1141+s_3_1142+s_3_1143+s_3_1144+s_3_1145+s_3_1146+s_3_1147+s_3_1148+s_3_1149 -f
WARNING: skipping lane 1 because RunInfo.xml file lists no tiles for it
WARNING: skipping lane 2 because RunInfo.xml file lists no tiles for it
WARNING: skipping lane 4 because RunInfo.xml file lists no tiles for it
WARNING: skipping lane 5 because RunInfo.xml file lists no tiles for it
WARNING: skipping lane 6 because RunInfo.xml file lists no tiles for it
WARNING: skipping lane 7 because RunInfo.xml file lists no tiles for it
WARNING: skipping lane 8 because RunInfo.xml file lists no tiles for it
  SoftwareVersion = 4.0.3
WARNING: shared-thread-linux-native-asio output could have low performance or hang if output directory is on a distributed file system
bcl-convert Version 00.000.000.4.0.3
__LOG_TAIL__ /fsx/analysis_results/ubuntu/bcl25b_l003_shard016_20260602T000733Z/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/logs/run_bclconvert.L003.0001_tiles0001-0049.log
prepared_lane_samplesheet lane=3 settings={"BarcodeMismatchesIndex1": "0", "BarcodeMismatchesIndex2": "0"} out=results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_reports/L003/0001_tiles0001-0049/SampleSheet.csv
run_bclconvert_lane L003 started: 2026-06-02T06:15:30+00:00
host: i192mem-dy-all-1
threads: 48
TMPDIR: /dev/shm
bcl_input_directory: /fsx/analysis_results/ubuntu/bcl25b_l003_shard016_20260602T000733Z/daylily-omics-analysis/config/run_dir_links/20260514_LH01106_0009_B23TVLGLT4
output_directory: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_fastqs/L003/0001_tiles0001-0049
sample_sheet: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_reports/L003/0001_tiles0001-0049/SampleSheet.csv
bcl_only_lane: 3
tile_regex: s_3_1101+s_3_1102+s_3_1103+s_3_1104+s_3_1105+s_3_1106+s_3_1107+s_3_1108+s_3_1109+s_3_1110+s_3_1111+s_3_1112+s_3_1113+s_3_1114+s_3_1115+s_3_1116+s_3_1117+s_3_1118+s_3_1119+s_3_1120+s_3_1121+s_3_1122+s_3_1123+s_3_1124+s_3_1125+s_3_1126+s_3_1127+s_3_1128+s_3_1129+s_3_1130+s_3_1131+s_3_1132+s_3_1133+s_3_1134+s_3_1135+s_3_1136+s_3_1137+s_3_1138+s_3_1139+s_3_1140+s_3_1141+s_3_1142+s_3_1143+s_3_1144+s_3_1145+s_3_1146+s_3_1147+s_3_1148+s_3_1149
sample_sheet_settings_json: {"BarcodeMismatchesIndex1": "0", "BarcodeMismatchesIndex2": "0"}
sample_sheet_settings_by_lane_json: {}
output_legacy_stats: true
num_unknown_barcodes_reported: 1000
48
Filesystem                Size  Used Avail Use% Mounted on
tmpfs                     605G     0  605G   0% /dev/shm
10.0.1.248@tcp:/3vbzxb4v  6.6T  3.4T  3.2T  52% /fsx
10.0.1.248@tcp:/3vbzxb4v  6.6T  3.4T  3.2T  52% /fsx
/usr/bin/singularity
singularity_bind_args: --bind /fsx:/fsx
INFO:    Using cached SIF image
bcl-convert Version 00.000.000.4.0.3
Copyright (c) 2014-2018 Illumina, Inc. 
bcl_num_parallel_tiles: 8
bcl_num_conversion_threads: 2
bcl_num_compression_threads: 24
bcl_num_decompression_threads: 8
bcl_cpu_heavy_threads: 48
bcl-convert command: singularity exec --bind /fsx:/fsx docker://nfcore/bclconvert:4.0.3 bcl-convert --bcl-input-directory /fsx/analysis_results/ubuntu/bcl25b_l003_shard016_20260602T000733Z/daylily-omics-analysis/config/run_dir_links/20260514_LH01106_0009_B23TVLGLT4 --output-directory results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_fastqs/L003/0001_tiles0001-0049 --sample-sheet results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_reports/L003/0001_tiles0001-0049/SampleSheet.csv --strict-mode false --first-tile-only false --bcl-sampleproject-subdirectories false --fastq-gzip-compression-level 1 --bcl-num-parallel-tiles 8 --bcl-num-conversion-threads 2 --bcl-num-compression-threads 24 --bcl-num-decompression-threads 8 --shared-thread-odirect-output true --output-legacy-stats true --num-unknown-barcodes-reported 1000 --tiles s_3_1101+s_3_1102+s_3_1103+s_3_1104+s_3_1105+s_3_1106+s_3_1107+s_3_1108+s_3_1109+s_3_1110+s_3_1111+s_3_1112+s_3_1113+s_3_1114+s_3_1115+s_3_1116+s_3_1117+s_3_1118+s_3_1119+s_3_1120+s_3_1121+s_3_1122+s_3_1123+s_3_1124+s_3_1125+s_3_1126+s_3_1127+s_3_1128+s_3_1129+s_3_1130+s_3_1131+s_3_1132+s_3_1133+s_3_1134+s_3_1135+s_3_1136+s_3_1137+s_3_1138+s_3_1139+s_3_1140+s_3_1141+s_3_1142+s_3_1143+s_3_1144+s_3_1145+s_3_1146+s_3_1147+s_3_1148+s_3_1149 -f
INFO:    Using cached SIF image
WARNING: skipping lane 1 because RunInfo.xml file lists no tiles for it
WARNING: skipping lane 2 because RunInfo.xml file lists no tiles for it
WARNING: skipping lane 4 because RunInfo.xml file lists no tiles for it
WARNING: skipping lane 5 because RunInfo.xml file lists no tiles for it
WARNING: skipping lane 6 because RunInfo.xml file lists no tiles for it
WARNING: skipping lane 7 because RunInfo.xml file lists no tiles for it
WARNING: skipping lane 8 because RunInfo.xml file lists no tiles for it
Index Read 2 is marked as Reverse Complement in RunInfo.xml: The barcode and UMI outputs will be output in Reverse Complement of Sample Sheet inputs.
Sample sheet being processed by common lib? Yes
SampleSheet Settings: 
  BarcodeMismatchesIndex1 = 0
  BarcodeMismatchesIndex2 = 0
  FastqCompressionFormat = gzip
  OverrideCycles = Y151;I10;I10;Y151
  SoftwareVersion = 4.0.3

shared-thread-linux-native-asio output is enabled
WARNING: shared-thread-linux-native-asio output could have low performance or hang if output directory is on a distributed file system
bcl-convert Version 00.000.000.4.0.3
Copyright (c) 2014-2022 Illumina, Inc.
Command Line: --bcl-input-directory /fsx/analysis_results/ubuntu/bcl25b_l003_shard016_20260602T000733Z/daylily-omics-analysis/config/run_dir_links/20260514_LH01106_0009_B23TVLGLT4 --output-directory results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_fastqs/L003/0001_tiles0001-0049 --sample-sheet results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_reports/L003/0001_tiles0001-0049/SampleSheet.csv --strict-mode false --first-tile-only false --bcl-sampleproject-subdirectories false --fastq-gzip-compression-level 1 --bcl-num-parallel-tiles 8 --bcl-num-conversion-threads 2 --bcl-num-compression-threads 24 --bcl-num-decompression-threads 8 --shared-thread-odirect-output true --output-legacy-stats true --num-unknown-barcodes-reported 1000 --tiles s_3_1101+s_3_1102+s_3_1103+s_3_1104+s_3_1105+s_3_1106+s_3_1107+s_3_1108+s_3_1109+s_3_1110+s_3_1111+s_3_1112+s_3_1113+s_3_1114+s_3_1115+s_3_1116+s_3_1117+s_3_1118+s_3_1119+s_3_1120+s_3_1121+s_3_1122+s_3_1123+s_3_1124+s_3_1125+s_3_1126+s_3_1127+s_3_1128+s_3_1129+s_3_1130+s_3_1131+s_3_1132+s_3_1133+s_3_1134+s_3_1135+s_3_1136+s_3_1137+s_3_1138+s_3_1139+s_3_1140+s_3_1141+s_3_1142+s_3_1143+s_3_1144+s_3_1145+s_3_1146+s_3_1147+s_3_1148+s_3_1149 -f 
Conversion Begins.
# CPU hw threads available: 64
Parallel Tiles: 8. Threads Per Tile: 2
SW compressors: 24
SW decompressors: 8
SW FASTQ compression level: 1
Conversion Complete.
run_bclconvert_lane L003 finished: 2026-06-02T06:26:41+00:00
__LOG_FILE__ /fsx/analysis_results/ubuntu/bcl25b_l003_shard016_20260602T000733Z/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/logs/run_bclconvert.L003.0002_tiles0050-0098.log
bcl-convert Version 00.000.000.4.0.3
bcl-convert command: singularity exec --bind /fsx:/fsx docker://nfcore/bclconvert:4.0.3 bcl-convert --bcl-input-directory /fsx/analysis_results/ubuntu/bcl25b_l003_shard016_20260602T000733Z/daylily-omics-analysis/config/run_dir_links/20260514_LH01106_0009_B23TVLGLT4 --output-directory results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_fastqs/L003/0002_tiles0050-0098 --sample-sheet results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_reports/L003/0002_tiles0050-0098/SampleSheet.csv --strict-mode false --first-tile-only false --bcl-sampleproject-subdirectories false --fastq-gzip-compression-level 1 --bcl-num-parallel-tiles 8 --bcl-num-conversion-threads 2 --bcl-num-compression-threads 24 --bcl-num-decompression-threads 8 --shared-thread-odirect-output true --output-legacy-stats true --num-unknown-barcodes-reported 1000 --tiles s_3_1150+s_3_1151+s_3_1152+s_3_1153+s_3_1154+s_3_1155+s_3_1156+s_3_1157+s_3_1158+s_3_1159+s_3_1160+s_3_1161+s_3_1162+s_3_1163+s_3_1164+s_3_1165+s_3_1166+s_3_1167+s_3_1168+s_3_1169+s_3_1170+s_3_1171+s_3_1172+s_3_1173+s_3_1174+s_3_1175+s_3_1176+s_3_1177+s_3_1178+s_3_1179+s_3_1180+s_3_1181+s_3_1182+s_3_1183+s_3_1184+s_3_1185+s_3_1186+s_3_1187+s_3_1188+s_3_1189+s_3_1190+s_3_1191+s_3_1192+s_3_1193+s_3_1194+s_3_1195+s_3_1196+s_3_1197+s_3_1198 -f
WARNING: skipping lane 1 because RunInfo.xml file lists no tiles for it
WARNING: skipping lane 2 because RunInfo.xml file lists no tiles for it
WARNING: skipping lane 4 because RunInfo.xml file lists no tiles for it
WARNING: skipping lane 5 because RunInfo.xml file lists no tiles for it
WARNING: skipping lane 6 because RunInfo.xml file lists no tiles for it
WARNING: skipping lane 7 because RunInfo.xml file lists no tiles for it
WARNING: skipping lane 8 because RunInfo.xml file lists no tiles for it
  SoftwareVersion = 4.0.3
WARNING: shared-thread-linux-native-asio output could have low performance or hang if output directory is on a distributed file system
bcl-convert Version 00.000.000.4.0.3
__LOG_TAIL__ /fsx/analysis_results/ubuntu/bcl25b_l003_shard016_20260602T000733Z/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/logs/run_bclconvert.L003.0002_tiles0050-0098.log
prepared_lane_samplesheet lane=3 settings={"BarcodeMismatchesIndex1": "0", "BarcodeMismatchesIndex2": "0"} out=results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_reports/L003/0002_tiles0050-0098/SampleSheet.csv
run_bclconvert_lane L003 started: 2026-06-02T06:15:30+00:00
host: i192mem-dy-all-3
threads: 48
TMPDIR: /dev/shm
bcl_input_directory: /fsx/analysis_results/ubuntu/bcl25b_l003_shard016_20260602T000733Z/daylily-omics-analysis/config/run_dir_links/20260514_LH01106_0009_B23TVLGLT4
output_directory: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_fastqs/L003/0002_tiles0050-0098
sample_sheet: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_reports/L003/0002_tiles0050-0098/SampleSheet.csv
bcl_only_lane: 3
tile_regex: s_3_1150+s_3_1151+s_3_1152+s_3_1153+s_3_1154+s_3_1155+s_3_1156+s_3_1157+s_3_1158+s_3_1159+s_3_1160+s_3_1161+s_3_1162+s_3_1163+s_3_1164+s_3_1165+s_3_--output truncated--