Index

A

adataviz module adataviz() (in module adataviz) adataviz.adata module adataviz.plotting module

adataviz.tools module adataviz.utils module AnnDataCollection (class in adataviz.adata) AnnDataView (class in adataviz.adata)

C

cal_stats() (in module adataviz.tools) cal_tpm() (in module adataviz.tools) categorical_scatter() (in module adataviz.utils)

composition() (in module adataviz.tools) continuous_scatter() (in module adataviz.utils) create_artists() (adataviz.utils.TextWithCircleHandler method)

D

density_contour() (in module adataviz.utils) despine() (in module adataviz.utils)

df2stdout() (in module adataviz.utils) downsample_adata() (in module adataviz.tools)

E

export_pseudobulk_adata() (in module adataviz.tools)

F

from_files() (adataviz.adata.AnnDataCollection class method)

G

get_boxplot_data() (in module adataviz.plotting) get_brain_region_structure() (in module adataviz.utils) get_cmap() (in module adataviz.utils) get_color_palette() (in module adataviz.tools)

get_genes_mean_frac() (in module adataviz.plotting) get_markers() (in module adataviz.tools) get_markers_worker() (in module adataviz.tools) get_obs() (in module adataviz.tools)

H

has_stats() (in module adataviz.plotting)

I

interactive_boxplot() (in module adataviz.plotting) interactive_dotHeatmap() (in module adataviz.plotting)

interactive_embedding() (in module adataviz.plotting) is_annadatacollection() (in module adataviz.adata)

L

level_one_palette() (in module adataviz.utils) load_adata() (in module adataviz.tools)

load_color_palette() (in module adataviz.tools) load_obs() (in module adataviz.tools)

M

main() (in module adataviz) (in module adataviz.adata) merge_adata_regions() (in module adataviz.tools) module adataviz adataviz.adata adataviz.plotting adataviz.tools adataviz.utils

mpl_style() (in module adataviz.utils)

N

normalize_adata() (in module adataviz.tools)

normalize_mc_by_cell() (in module adataviz.utils)

P

parse_gtf() (in module adataviz.utils) parse_json() (in module adataviz.utils) pieplot() (in module adataviz.plotting) plot_categorical() (in module adataviz.plotting) plot_cmap_legend() (in module adataviz.utils) plot_color_dict_legend() (in module adataviz.utils) plot_gene() (in module adataviz.plotting)

plot_genes() (in module adataviz.plotting) plot_interacrive_boxplot_from_stats() (in module adataviz.plotting) plot_interactive_boxlot_from_data() (in module adataviz.plotting) plot_marker_legend() (in module adataviz.utils) plot_pseudotime() (in module adataviz.plotting) plot_text_legend() (in module adataviz.utils) prepare_color_palette() (in module adataviz.tools) (in module adataviz.utils)

R

read() (adataviz.adata.AnnDataCollection class method)

read_google_sheet() (in module adataviz.utils)

S

scrna2pseudobulk() (in module adataviz.tools) serialize() (in module adataviz.utils) show_fig() (in module adataviz.plotting)

stacked_barplot() (in module adataviz.plotting) stacked_violinplot() (in module adataviz.plotting) stat_pseudobulk() (in module adataviz.tools)

T

taxonomy() (in module adataviz.tools) test_subset() (in module adataviz.adata)

TextWithCircleHandler (class in adataviz.utils) tight_hue_range() (in module adataviz.utils) to_memory() (adataviz.adata.AnnDataView method)

U

update_paths() (adataviz.adata.AnnDataCollection method)

use_scientific_style() (in module adataviz.plotting)

Z

zoom_ax() (in module adataviz.utils)

zoom_min_max() (in module adataviz.utils)