adataviz

• adataviz package
  • Submodules
    • adataviz.adata module
      • AnnDataCollection
      • AnnDataView
      • is_annadatacollection()
      • main()
      • test_subset()
    • adataviz.plotting module
      • get_boxplot_data()
      • get_genes_mean_frac()
      • has_stats()
      • interactive_boxplot()
      • interactive_dotHeatmap()
      • interactive_embedding()
      • pieplot()
      • plot_categorical()
      • plot_gene()
      • plot_genes()
      • plot_interacrive_boxplot_from_stats()
      • plot_interactive_boxlot_from_data()
      • plot_pseudotime()
      • show_fig()
      • stacked_barplot()
      • stacked_violinplot()
      • use_scientific_style()
    • adataviz.tools module
      • cal_stats()
      • cal_tpm()
      • composition()
      • downsample_adata()
      • export_pseudobulk_adata()
      • get_color_palette()
      • get_markers()
      • get_markers_worker()
      • get_obs()
      • load_adata()
      • load_color_palette()
      • load_obs()
      • merge_adata_regions()
      • normalize_adata()
      • prepare_color_palette()
      • scrna2pseudobulk()
      • stat_pseudobulk()
      • taxonomy()
    • adataviz.utils module
      • TextWithCircleHandler
      • categorical_scatter()
      • continuous_scatter()
      • density_contour()
      • despine()
      • df2stdout()
      • get_brain_region_structure()
      • get_cmap()
      • level_one_palette()
      • mpl_style()
      • normalize_mc_by_cell()
      • parse_gtf()
      • parse_json()
      • plot_cmap_legend()
      • plot_color_dict_legend()
      • plot_marker_legend()
      • plot_text_legend()
      • prepare_color_palette()
      • read_google_sheet()
      • serialize()
      • tight_hue_range()
      • zoom_ax()
      • zoom_min_max()
  • Module contents
    • adataviz()
    • main()
• setup module