.gitignore
CHANGELOG.md
LICENSE
MANIFEST.in
README.md
RELEASING.md
mkdocs.yml
pixi.lock
pixi.toml
pyproject.toml
.github/workflows/docs-pages.yml
.github/workflows/release.yml
.github/workflows/tests.yml
docs/architecture.md
docs/full-run-example.md
docs/index.md
docs/installation.md
docs/limits-and-roadmap.md
docs/optimization-guide.md
docs/quickstart.md
docs/showcase-experiment.md
docs/api/bridge.md
docs/api/optim.md
docs/api/pipeline.md
docs/api/weather.md
docs/assets/full-run/acquisition_table.csv
docs/assets/full-run/artifact_manifest.json
docs/assets/full-run/environment.json
docs/assets/full-run/explorer.html
docs/assets/full-run/explorer_payload.json
docs/assets/full-run/run_config.json
docs/assets/full-run/variable_inventory.csv
docs/assets/full-run/workflow_metrics.csv
docs/assets/full-run/figures/acquisition_timeline.svg
docs/assets/full-run/figures/arc_biophysics.svg
docs/assets/full-run/figures/arc_peak_maps.png
docs/assets/full-run/figures/field_boundary.png
docs/assets/full-run/figures/fluorescence_outputs.svg
docs/assets/full-run/figures/fluorescence_snapshot_maps.png
docs/assets/full-run/figures/observation_geometry.svg
docs/assets/full-run/figures/reflectance_outputs.svg
docs/assets/full-run/figures/reflectance_snapshot_maps.png
docs/assets/full-run/figures/scope_input_overview.svg
docs/assets/full-run/figures/thermal_outputs.svg
docs/assets/full-run/figures/thermal_snapshot_maps.png
docs/assets/full-run/figures/weather_forcing.svg
docs/assets/full-run/figures/workflow_comparison.svg
docs/assets/optimization/energy_balance_fit.svg
docs/assets/optimization/parameter_summary.csv
docs/assets/optimization/parameter_summary.svg
docs/assets/optimization/sif_fit.svg
docs/assets/optimization/summary.json
docs/assets/optimization/thermal_fit.svg
docs/assets/optimization/timeseries.csv
docs/assets/showcase/dashboard.html
docs/assets/showcase/proxy_sif_fit.svg
docs/assets/showcase/radiation_partition.svg
docs/assets/showcase/summary.json
docs/assets/showcase/timeseries.csv
examples/01_bridge_conversion.py
examples/02_reflectance_simulation.py
examples/03_full_pipeline.py
examples/04_optimization_demo.py
examples/05_showcase_experiment.py
examples/06_dual_workflow_full_run.py
examples/07_optimization_examples.py
src/arc_scope/__init__.py
src/arc_scope/_version.py
src/arc_scope/bridge/__init__.py
src/arc_scope/bridge/convert.py
src/arc_scope/bridge/parameter_map.py
src/arc_scope/bridge/soil.py
src/arc_scope/data/__init__.py
src/arc_scope/data/showcase_weather.csv
src/arc_scope/data/test_field.geojson
src/arc_scope/experiments/__init__.py
src/arc_scope/experiments/dual_workflow.py
src/arc_scope/experiments/optimization_examples.py
src/arc_scope/experiments/showcase.py
src/arc_scope/optim/__init__.py
src/arc_scope/optim/objective.py
src/arc_scope/optim/parameters.py
src/arc_scope/optim/protocols.py
src/arc_scope/pipeline/__init__.py
src/arc_scope/pipeline/config.py
src/arc_scope/pipeline/optimization.py
src/arc_scope/pipeline/runner.py
src/arc_scope/pipeline/steps.py
src/arc_scope/utils/__init__.py
src/arc_scope/utils/geometry.py
src/arc_scope/utils/io.py
src/arc_scope/utils/types.py
src/arc_scope/weather/__init__.py
src/arc_scope/weather/base.py
src/arc_scope/weather/cache.py
src/arc_scope/weather/era5.py
src/arc_scope/weather/local.py
src/arc_scope/weather/radiation.py
src/arcope.egg-info/PKG-INFO
src/arcope.egg-info/SOURCES.txt
src/arcope.egg-info/dependency_links.txt
src/arcope.egg-info/entry_points.txt
src/arcope.egg-info/requires.txt
src/arcope.egg-info/top_level.txt
tests/conftest.py
tests/test_bridge/__init__.py
tests/test_bridge/test_convert.py
tests/test_bridge/test_parameter_map.py
tests/test_bridge/test_soil.py
tests/test_experiments/test_dual_workflow.py
tests/test_experiments/test_optimization_examples.py
tests/test_experiments/test_showcase.py
tests/test_optim/__init__.py
tests/test_optim/test_objective.py
tests/test_optim/test_parameters.py
tests/test_optim/test_protocols.py
tests/test_pipeline/__init__.py
tests/test_pipeline/test_config.py
tests/test_pipeline/test_runner.py
tests/test_pipeline/test_steps.py
tests/test_utils/__init__.py
tests/test_utils/test_geometry.py
tests/test_utils/test_io.py
tests/test_weather/__init__.py
tests/test_weather/test_base.py
tests/test_weather/test_cache.py
tests/test_weather/test_era5.py
tests/test_weather/test_local.py
tests/test_weather/test_radiation.py