LICENSE
MANIFEST.in
README.md
pyproject.toml
TwinCons.egg-info/PKG-INFO
TwinCons.egg-info/SOURCES.txt
TwinCons.egg-info/dependency_links.txt
TwinCons.egg-info/entry_points.txt
TwinCons.egg-info/requires.txt
TwinCons.egg-info/top_level.txt
tests/__init__.py
tests/test.py
tests/test_core.py
tests/input_test_data/alns/AB_LSU_rRNA.fa
tests/input_test_data/alns/bS01-RNAP7Ca.fa
tests/input_test_data/alns/uL02ab_txid_tagged.fas
tests/input_test_data/compositional_adjustment/newton_direct_solve_blosum62_uL02ab.txt
twincons/AlignmentGroup.py
twincons/CompositionalAdjustment.py
twincons/MatrixInfo.py
twincons/MatrixLoad.py
twincons/SequenceWeightFromTree.py
twincons/TwinCons.py
twincons/__init__.py
twincons/entry.py
twincons/twcSupportFunctions.py
twincons/matrices/LG.dat
twincons/matrices/BLOSUM/blosum100.out
twincons/matrices/BLOSUM/blosum30.out
twincons/matrices/BLOSUM/blosum35.out
twincons/matrices/BLOSUM/blosum40.out
twincons/matrices/BLOSUM/blosum45.out
twincons/matrices/BLOSUM/blosum50.out
twincons/matrices/BLOSUM/blosum55.out
twincons/matrices/BLOSUM/blosum60.out
twincons/matrices/BLOSUM/blosum62.out
twincons/matrices/BLOSUM/blosum65.out
twincons/matrices/BLOSUM/blosum70.out
twincons/matrices/BLOSUM/blosum75.out
twincons/matrices/BLOSUM/blosum80.out
twincons/matrices/BLOSUM/blosum85.out
twincons/matrices/BLOSUM/blosum90.out
twincons/matrices/BLOSUM/blosum95.out
twincons/matrices/jp/BO.dat
twincons/matrices/jp/benner22.dat
twincons/matrices/jp/benner74.dat
twincons/matrices/jp/blastn.dat
twincons/matrices/jp/blosum100.dat
twincons/matrices/jp/blosum30.dat
twincons/matrices/jp/blosum35.dat
twincons/matrices/jp/blosum40.dat
twincons/matrices/jp/blosum45.dat
twincons/matrices/jp/blosum50.dat
twincons/matrices/jp/blosum55.dat
twincons/matrices/jp/blosum60.dat
twincons/matrices/jp/blosum62.dat
twincons/matrices/jp/blosum65.dat
twincons/matrices/jp/blosum70.dat
twincons/matrices/jp/blosum75.dat
twincons/matrices/jp/blosum80.dat
twincons/matrices/jp/blosum85.dat
twincons/matrices/jp/blosum90.dat
twincons/matrices/jp/blosum95.dat
twincons/matrices/jp/gonnet.dat
twincons/matrices/jp/ident.dat
twincons/matrices/jp/identity.dat
twincons/matrices/jp/johnson.dat
twincons/matrices/jp/miyata.dat
twincons/matrices/jp/structure.dat
twincons/matrices/jp/trans.dat
twincons/matrices/structureDerived/B.dat
twincons/matrices/structureDerived/BEHOS.dat
twincons/matrices/structureDerived/BH.dat
twincons/matrices/structureDerived/BO.dat
twincons/matrices/structureDerived/BS.dat
twincons/matrices/structureDerived/E.dat
twincons/matrices/structureDerived/EH.dat
twincons/matrices/structureDerived/EO.dat
twincons/matrices/structureDerived/ES.dat
twincons/matrices/structureDerived/H.dat
twincons/matrices/structureDerived/O.dat
twincons/matrices/structureDerived/S.dat