anndata>=0.8.0
communities>=3.0.0
datasets>=3.0.1
networkx>=3.0
numpy>=1.22.0
pandas>=2.0.3
peft>=0.8.2
pyarrow>=17.0.0
pytorch_lightning>=1.9.4
scanpy>=1.10.2
scikit-learn>=1.3.2
scipy>=1.10.1
statsmodels>=0.14.5
transformers==4.57.3
wandb>=0.14.0

[numba]
torch_geometric>=2.5.3
umap-learn>=0.5.4
scanpy>=1.9.8

[simulation]
sim-fish>=0.2.0
umap==0.1.1
