.gitignore
CITATION.cff
LICENSE
README.rst
pyproject.toml
requirements.txt
.github/workflows/documentation.yml
.github/workflows/package_release.yml
.github/workflows/pull_request.yml
.github/workflows/pypi.yml
.github/workflows/tests.yml
dev/README.md
dev/conftest.py
dev/install.sh
dev/pytest.ini
dev/test.sh
dev/test_entry_ids.py
dev/test_entry_ids_cli.py
dev/test_kegg_url.py
dev/test_main.py
dev/test_map.py
dev/test_map_cli.py
dev/test_pathway_organizer.py
dev/test_pathway_organizer_cli.py
dev/test_pull.py
dev/test_pull_cli.py
dev/test_rest.py
dev/test_rest_cli.py
dev/test_utils.py
dev/utils.py
dev/test_data/all-brite-entry-ids.txt
dev/test_data/ddi-output.txt
dev/test_data/drug-entry-ids.txt
dev/test_data/glycan-pubchem-conv.txt
dev/test_data/glycan-pubchem-entry-ids.txt
dev/test_data/module-entry-ids.txt
dev/test_data/module-pathway-link.txt
dev/test_data/pathway-module-entry-ids.txt
dev/test_data/brite-entries/br_br08005.txt
dev/test_data/brite-entries/br_br08431.txt
dev/test_data/brite-entries/br_br08902.txt
dev/test_data/brite-entries/pull-results.tmp.json
dev/test_data/map/compound-reaction-pathway.json
dev/test_data/map/empty.json
dev/test_data/map/mmu-ncbi.json
dev/test_data/map/module.json
dev/test_data/map/pathway-gene.json
dev/test_data/map/pubchem.json
dev/test_data/pathway-organizer/all-nodes.json
dev/test_data/pathway-organizer/filter-nodes.json
dev/test_data/pathway-organizer/metabolic-pathways.json
dev/test_data/pathway-organizer/pathway-hierarchy.json
dev/test_data/pathway-organizer/top-level-nodes.json
docs/Makefile
docs/api.rst
docs/cli.rst
docs/conf.py
docs/guide.rst
docs/index.rst
docs/license.rst
docs/make.bat
docs/requirements.txt
docs/tutorial.rst
docs/_static/.gitignore
docs/notebook/clean.sh
docs/notebook/correct_nbconvert.py
docs/notebook/server.sh
docs/notebook/to-rst.sh
src/kegg_pull/__init__.py
src/kegg_pull/__main__.py
src/kegg_pull/_utils.py
src/kegg_pull/_version.py
src/kegg_pull/entry_ids.py
src/kegg_pull/entry_ids_cli.py
src/kegg_pull/kegg_url.py
src/kegg_pull/map.py
src/kegg_pull/map_cli.py
src/kegg_pull/pathway_organizer.py
src/kegg_pull/pathway_organizer_cli.py
src/kegg_pull/pull.py
src/kegg_pull/pull_cli.py
src/kegg_pull/rest.py
src/kegg_pull/rest_cli.py
src/kegg_pull.egg-info/PKG-INFO
src/kegg_pull.egg-info/SOURCES.txt
src/kegg_pull.egg-info/dependency_links.txt
src/kegg_pull.egg-info/entry_points.txt
src/kegg_pull.egg-info/requires.txt
src/kegg_pull.egg-info/top_level.txt