LICENSE
README.md
pyproject.toml
setup.py
methurator/__init__.py
methurator/cli.py
methurator/downsample.py
methurator/plot.py
methurator.egg-info/PKG-INFO
methurator.egg-info/SOURCES.txt
methurator.egg-info/dependency_links.txt
methurator.egg-info/entry_points.txt
methurator.egg-info/requires.txt
methurator.egg-info/top_level.txt
methurator/config_utils/__init__.py
methurator/config_utils/bam_dir_utils.py
methurator/config_utils/config_formatter.py
methurator/config_utils/config_validator.py
methurator/config_utils/download_reference.py
methurator/config_utils/validation_utils.py
methurator/config_utils/verbose_utils.py
methurator/downsample_utils/__init__.py
methurator/downsample_utils/methyldackel.py
methurator/downsample_utils/run_processing.py
methurator/downsample_utils/subsample_bam.py
methurator/plot_utils/__init__.py
methurator/plot_utils/math_model.py
methurator/plot_utils/plot_checker.py
methurator/plot_utils/plot_curve.py
methurator/plot_utils/plot_functions.py
tests/test_bam_utils.py
tests/test_coverage_utils.py
tests/test_fasta_utils.py
tests/test_methyldackel.py
tests/test_percentage_utils.py
tests/test_subsample_bam.py
tests/test_summary_files_validation.py