LICENSE
README.md
pyproject.toml
src/deep_zotero/__init__.py
src/deep_zotero/_reference_matcher.py
src/deep_zotero/chunker.py
src/deep_zotero/cli.py
src/deep_zotero/config.py
src/deep_zotero/embedder.py
src/deep_zotero/index_stats.py
src/deep_zotero/indexer.py
src/deep_zotero/interfaces.py
src/deep_zotero/journal_ranker.py
src/deep_zotero/models.py
src/deep_zotero/openalex_client.py
src/deep_zotero/orphan_recovery.py
src/deep_zotero/pdf_processor.py
src/deep_zotero/reranker.py
src/deep_zotero/retriever.py
src/deep_zotero/section_classifier.py
src/deep_zotero/server.py
src/deep_zotero/vector_store.py
src/deep_zotero/zotero_client.py
src/deep_zotero.egg-info/PKG-INFO
src/deep_zotero.egg-info/SOURCES.txt
src/deep_zotero.egg-info/dependency_links.txt
src/deep_zotero.egg-info/entry_points.txt
src/deep_zotero.egg-info/requires.txt
src/deep_zotero.egg-info/top_level.txt
src/deep_zotero/data/journal_overrides.csv
src/deep_zotero/data/scimago_quartiles.csv
src/deep_zotero/feature_extraction/__init__.py
src/deep_zotero/feature_extraction/captions.py
src/deep_zotero/feature_extraction/debug_db.py
src/deep_zotero/feature_extraction/vision_api.py
src/deep_zotero/feature_extraction/vision_extract.py
src/deep_zotero/feature_extraction/methods/__init__.py
src/deep_zotero/feature_extraction/methods/figure_detection.py
src/deep_zotero/feature_extraction/postprocessors/__init__.py
src/deep_zotero/feature_extraction/postprocessors/cell_cleaning.py
tests/test_boolean_search.py
tests/test_citation_keys.py
tests/test_content_quality.py
tests/test_embedder_retry.py
tests/test_extraction_completeness.py
tests/test_extraction_integration.py
tests/test_figure_quality.py
tests/test_hash_detection.py
tests/test_index_report.py
tests/test_index_stats.py
tests/test_indexer_vision.py
tests/test_journal_ranker.py
tests/test_local_embeddings.py
tests/test_metadata_search.py
tests/test_models.py
tests/test_ocr.py
tests/test_openalex.py
tests/test_pdf_processor.py
tests/test_plugin_manifest.py
tests/test_real_papers.py
tests/test_reference_matcher.py
tests/test_release_script.py
tests/test_reranker.py
tests/test_section_quality.py
tests/test_table_quality.py
tests/test_zotero_items.py