LICENSE
README.md
pyproject.toml
src/tcr_explorer/__init__.py
src/tcr_explorer/annotator.py
src/tcr_explorer/api.py
src/tcr_explorer/ask.py
src/tcr_explorer/bootstrap.py
src/tcr_explorer/cdr_enricher.py
src/tcr_explorer/config.py
src/tcr_explorer/constant_regions.py
src/tcr_explorer/d_regions.py
src/tcr_explorer/data_paths.py
src/tcr_explorer/data_sources.py
src/tcr_explorer/dossier.py
src/tcr_explorer/dossier_epitopes.py
src/tcr_explorer/dossier_models.py
src/tcr_explorer/fasta_parser.py
src/tcr_explorer/file_ingest.py
src/tcr_explorer/frontend.py
src/tcr_explorer/germline_db.py
src/tcr_explorer/germline_sets.py
src/tcr_explorer/input_router.py
src/tcr_explorer/kmer_aligner.py
src/tcr_explorer/llm_client.py
src/tcr_explorer/mcp_clients.py
src/tcr_explorer/mcp_server.py
src/tcr_explorer/models.py
src/tcr_explorer/msa.py
src/tcr_explorer/nl_query.py
src/tcr_explorer/py.typed
src/tcr_explorer/query_nl.py
src/tcr_explorer/query_router.py
src/tcr_explorer/reconstructor.py
src/tcr_explorer/records.py
src/tcr_explorer/records_build.py
src/tcr_explorer/similarity.py
src/tcr_explorer/tcr_align.py
src/tcr_explorer/tcrdist_engine.py
src/tcr_explorer.egg-info/PKG-INFO
src/tcr_explorer.egg-info/SOURCES.txt
src/tcr_explorer.egg-info/dependency_links.txt
src/tcr_explorer.egg-info/entry_points.txt
src/tcr_explorer.egg-info/requires.txt
src/tcr_explorer.egg-info/top_level.txt
src/tcr_explorer/data/blosum62.json
src/tcr_explorer/data/germline/ATTRIBUTION.md
src/tcr_explorer/data/germline/HUMAN/C-region-motifs.tsv
src/tcr_explorer/data/germline/HUMAN/IMGTgeneDLwarnings.txt
src/tcr_explorer/data/germline/HUMAN/J-region-motifs.tsv
src/tcr_explorer/data/germline/HUMAN/TRA.fasta
src/tcr_explorer/data/germline/HUMAN/TRB.fasta
src/tcr_explorer/data/germline/HUMAN/TRD.fasta
src/tcr_explorer/data/germline/HUMAN/TRG.fasta
src/tcr_explorer/data/germline/HUMAN/data-production-date.tsv
src/tcr_explorer/data/germline/HUMAN/imgt-data.fasta
src/tcr_explorer/data/germline/MOUSE/C-region-motifs.tsv
src/tcr_explorer/data/germline/MOUSE/IMGTgeneDLwarnings.txt
src/tcr_explorer/data/germline/MOUSE/J-region-motifs.tsv
src/tcr_explorer/data/germline/MOUSE/TRA.fasta
src/tcr_explorer/data/germline/MOUSE/TRB.fasta
src/tcr_explorer/data/germline/MOUSE/TRD.fasta
src/tcr_explorer/data/germline/MOUSE/TRG.fasta
src/tcr_explorer/data/germline/MOUSE/data-production-date.tsv
src/tcr_explorer/data/germline/MOUSE/imgt-data.fasta
src/tcr_explorer/data/tcrdist/ATTRIBUTION.md
src/tcr_explorer/data/tcrdist/alphabeta_gammadelta_db.tsv
tests/test_align_api.py
tests/test_annotator.py
tests/test_ask.py
tests/test_ask_api.py
tests/test_assign_api.py
tests/test_bootstrap.py
tests/test_caching.py
tests/test_cdr_enricher.py
tests/test_config.py
tests/test_constant_regions_human.py
tests/test_data_paths.py
tests/test_data_sources.py
tests/test_dossier.py
tests/test_dossier_api.py
tests/test_dossier_epitopes.py
tests/test_dossier_honesty.py
tests/test_dossier_models.py
tests/test_dossier_neighbours.py
tests/test_download_wiring.py
tests/test_env_config.py
tests/test_frontend.py
tests/test_germline_db.py
tests/test_germline_sets.py
tests/test_health.py
tests/test_input_router.py
tests/test_kmer_aligner.py
tests/test_llm_client.py
tests/test_makefile.py
tests/test_mcp_align.py
tests/test_mcp_server.py
tests/test_mhc_integration.py
tests/test_mhc_organism.py
tests/test_mhc_server.py
tests/test_models.py
tests/test_msa.py
tests/test_msa_codon.py
tests/test_nl_query.py
tests/test_packaged_data.py
tests/test_pagination.py
tests/test_query_api.py
tests/test_query_nl.py
tests/test_query_router.py
tests/test_reconstruct_infer.py
tests/test_reconstruction_fullchain.py
tests/test_reconstructor_frame.py
tests/test_record_builder.py
tests/test_records_api.py
tests/test_records_build.py
tests/test_records_null_robustness.py
tests/test_records_retrieval.py
tests/test_requirements.py
tests/test_schema_descriptions.py
tests/test_search_hla_mhc.py
tests/test_similar_api.py
tests/test_similar_paired.py
tests/test_similarity.py
tests/test_similarity_models.py
tests/test_tcr_align.py
tests/test_tcrdist_engine.py
tests/test_ui.py
tests/test_ui_browser.py
tests/test_unitcr_index_build.py